Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JYB87_RS17135 Genome accession   NZ_CP071503
Coordinates   3888694..3890211 (+) Length   505 a.a.
NCBI ID   WP_207354651.1    Uniprot ID   -
Organism   Shewanella avicenniae strain FJAT-51800     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3883694..3895211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB87_RS17115 (JYB87_17115) ilvC 3884051..3885532 (-) 1482 WP_207354647.1 ketol-acid reductoisomerase -
  JYB87_RS17120 (JYB87_17120) ilvY 3885691..3886563 (+) 873 WP_207354648.1 HTH-type transcriptional activator IlvY -
  JYB87_RS17125 (JYB87_17125) - 3886569..3887897 (-) 1329 WP_207354649.1 hemolysin family protein -
  JYB87_RS17130 (JYB87_17130) - 3888136..3888375 (-) 240 WP_207354650.1 hypothetical protein -
  JYB87_RS17135 (JYB87_17135) comM 3888694..3890211 (+) 1518 WP_207354651.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JYB87_RS17140 (JYB87_17140) udp 3890260..3891018 (-) 759 WP_207354652.1 uridine phosphorylase -
  JYB87_RS17145 (JYB87_17145) - 3891289..3891513 (+) 225 WP_207354653.1 YdcH family protein -
  JYB87_RS17150 (JYB87_17150) - 3891559..3892734 (-) 1176 WP_207354654.1 type III PLP-dependent enzyme -
  JYB87_RS17155 (JYB87_17155) - 3893150..3893632 (-) 483 WP_207354655.1 hypothetical protein -
  JYB87_RS17160 (JYB87_17160) - 3893733..3894584 (+) 852 WP_207354656.1 mechanosensitive ion channel family protein -
  JYB87_RS17165 (JYB87_17165) - 3894785..3894988 (+) 204 WP_228729902.1 hypothetical protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54248.42 Da        Isoelectric Point: 8.8050

>NTDB_id=545755 JYB87_RS17135 WP_207354651.1 3888694..3890211(+) (comM) [Shewanella avicenniae strain FJAT-51800]
MAIARVATRAANGVDAPQVWVEAHLANGLPAFTLVGLPETSVREARERVRSAIINAGFEFPMRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPIKSLEGWEFVGELALSGEVRGCNGLLPVIIEARKLGTSLIMPQANRNDAELVGYQQVQLAAHL
QHIVAFLHGQQQLPGINASPDWVSPPPAAVGCLSEVIGQYQAKQALEIAAAGNHNLLFLGPPGTGKSMLASRILSLLPTM
DYEEALQVSAIHSVAGMPLAPQQFFQRPFRAPHHTSSAISLVGGGSIPKPGEISLAHLGVLFLDEVAEFPRKVLDCLREP
METGEVVISRAAAKLKFNARFQLIAAMNPSPCGDSGPESRASPEQIRRYLSRLSGPFIDRFDLTVEVPKLPPGTLTADSG
DGETSASIAQRVARARQTQLQRAGKLNNELSGSELKQAGFAAADLVFLEQSVTKLGLSVRSFHRLQRVARTIADLAESPI
VERRHIAQALGYRAMDRLLANLSRQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=545755 JYB87_RS17135 WP_207354651.1 3888694..3890211(+) (comM) [Shewanella avicenniae strain FJAT-51800]
ATGGCAATAGCTCGCGTTGCCACCCGTGCAGCTAACGGTGTGGATGCTCCACAAGTGTGGGTTGAAGCCCACCTCGCAAA
CGGCTTACCAGCCTTTACCTTGGTTGGCTTACCCGAAACCTCCGTTCGAGAAGCCCGCGAGCGGGTTCGCAGTGCCATCA
TCAATGCCGGCTTCGAATTCCCGATGCGGCGCATCACTATCAATCTCGCTCCAGCTGATCTGCCCAAACAGGGTGGCCGT
TATGATCTGCCAATAGCCATCGGCATTTTGGCGGCATCCGGCCAGTTGCCGATTAAATCGCTCGAAGGTTGGGAGTTTGT
CGGCGAGCTGGCGCTAAGCGGCGAGGTGCGTGGCTGCAACGGCTTGCTGCCAGTGATTATTGAAGCGCGCAAACTCGGCA
CCAGTTTGATCATGCCGCAAGCTAACCGCAATGATGCCGAACTGGTGGGCTATCAACAGGTACAATTGGCAGCCCATCTG
CAACACATCGTGGCGTTTTTGCATGGTCAACAGCAACTGCCGGGGATTAATGCCAGCCCAGATTGGGTCTCACCACCGCC
AGCAGCCGTCGGCTGTTTAAGTGAAGTTATCGGCCAATACCAAGCTAAGCAGGCGTTAGAAATCGCCGCCGCAGGCAATC
ATAATCTGCTGTTTCTTGGCCCACCGGGGACTGGCAAATCGATGCTCGCCAGCCGGATTCTCTCCTTACTGCCAACAATG
GATTACGAAGAGGCGCTGCAAGTATCAGCGATTCATTCGGTGGCGGGCATGCCGCTCGCCCCACAGCAGTTTTTTCAGCG
GCCATTTCGCGCGCCACATCATACGAGTTCGGCGATTTCACTGGTTGGCGGCGGCAGCATTCCCAAACCGGGCGAGATCT
CGCTGGCGCATTTGGGCGTATTGTTTTTGGATGAAGTGGCCGAGTTCCCGCGTAAGGTGCTCGATTGCCTGCGTGAGCCG
ATGGAAACCGGCGAGGTAGTGATTTCGCGCGCCGCCGCTAAGCTCAAATTCAATGCTAGGTTTCAGCTAATTGCCGCGAT
GAACCCAAGCCCCTGTGGTGATTCAGGGCCAGAAAGCCGCGCCTCACCAGAGCAGATTCGGCGTTACCTATCCCGCCTGT
CGGGGCCATTTATTGACCGCTTTGATTTGACCGTGGAAGTGCCCAAACTGCCACCCGGCACCCTCACCGCCGATAGCGGT
GATGGCGAAACCAGTGCCAGCATTGCCCAACGTGTCGCCAGAGCACGTCAAACCCAACTGCAACGAGCAGGAAAATTAAA
TAACGAACTGTCGGGCAGCGAGCTAAAACAAGCAGGGTTTGCCGCCGCGGATCTGGTGTTTTTAGAACAGAGTGTCACCA
AATTAGGCTTATCAGTCCGCAGTTTTCATCGCTTGCAGCGTGTTGCCCGTACGATTGCAGATTTGGCCGAATCGCCCATC
GTGGAACGGCGCCATATTGCCCAAGCATTGGGTTATCGCGCCATGGACAGGCTGCTGGCCAACCTGTCCCGCCAGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.016

100

0.562
  comM Haemophilus influenzae Rd KW20

55.03

100

0.552
  comM Vibrio campbellii strain DS40M4

54.438

100

0.547
  comM Glaesserella parasuis strain SC1401

54.545

100

0.547
  comM Legionella pneumophila str. Paris

45.365

100

0.455
  comM Legionella pneumophila strain ERS1305867

45.365

100

0.455
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.929

100

0.422