Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPAKL117_RS06475 Genome accession   NC_019560
Coordinates   1342164..1343477 (-) Length   437 a.a.
NCBI ID   WP_015086275.1    Uniprot ID   -
Organism   Helicobacter pylori Aklavik117     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1337164..1348477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPAKL117_RS06445 (HPAKL117_06455) nadC 1337627..1338448 (-) 822 WP_015086269.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPAKL117_RS06450 (HPAKL117_06460) nadA 1338448..1339458 (-) 1011 WP_015086270.1 quinolinate synthase NadA -
  HPAKL117_RS06455 (HPAKL117_06465) - 1339448..1340251 (-) 804 WP_015086271.1 phosphatidylserine decarboxylase -
  HPAKL117_RS06460 (HPAKL117_06470) - 1340248..1340751 (-) 504 WP_015086272.1 DUF6115 domain-containing protein -
  HPAKL117_RS06465 (HPAKL117_06475) - 1340764..1341258 (-) 495 WP_015086273.1 hypothetical protein -
  HPAKL117_RS06470 (HPAKL117_06480) mqnP 1341251..1342093 (-) 843 WP_228839862.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPAKL117_RS06475 (HPAKL117_06485) comEC/comE3 1342164..1343477 (-) 1314 WP_015086275.1 ComEC/Rec2 family competence protein Machinery gene
  HPAKL117_RS06480 (HPAKL117_06490) - 1343474..1344940 (-) 1467 WP_015086276.1 replicative DNA helicase -
  HPAKL117_RS06485 (HPAKL117_06495) - 1344951..1346345 (-) 1395 WP_015086277.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPAKL117_RS06490 (HPAKL117_06500) crdS 1346348..1347550 (-) 1203 WP_080115133.1 copper-sensing histidine kinase CrdS -
  HPAKL117_RS06495 (HPAKL117_06505) crdR 1347516..1348157 (-) 642 WP_015086279.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50028.01 Da        Isoelectric Point: 9.8515

>NTDB_id=54575 HPAKL117_RS06475 WP_015086275.1 1342164..1343477(-) (comEC/comE3) [Helicobacter pylori Aklavik117]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRGFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSAGVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPLLNMPLTIPTISISSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=54575 HPAKL117_RS06475 WP_015086275.1 1342164..1343477(-) (comEC/comE3) [Helicobacter pylori Aklavik117]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATATTTGCTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTGGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTAGAGTCTTTAAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGCAAACAAGATTTCAAATCGCATT
GGCGCGGCTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGGAATTTATACCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGTGCAGGCGTGTATTTCCTTTTCTCTCTTTTTTATACTCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTGGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
TTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTAGATCCCC
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.423

100

0.954

Multiple sequence alignment