Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LO006_RS10815 Genome accession   NZ_CP087348
Coordinates   2231512..2232147 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain DB006     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2226512..2237147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO006_RS10790 - 2226568..2227548 (-) 981 WP_001075411.1 DNA polymerase III subunit delta' -
  LO006_RS10795 kdsB 2227560..2228321 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LO006_RS10800 lpxK 2228331..2229341 (-) 1011 WP_000050464.1 tetraacyldisaccharide 4'-kinase -
  LO006_RS10805 msbA 2229344..2231071 (-) 1728 WP_001070734.1 lipid A export permease/ATP-binding protein MsbA -
  LO006_RS10810 - 2231068..2231496 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  LO006_RS10815 exbB 2231512..2232147 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LO006_RS10820 - 2232197..2233084 (-) 888 WP_000023433.1 ParB/RepB/Spo0J family partition protein -
  LO006_RS10825 - 2233081..2233863 (-) 783 WP_000057212.1 ParA family protein -
  LO006_RS10830 rsmG 2233885..2234517 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LO006_RS10835 murU 2234605..2235294 (-) 690 WP_000646452.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  LO006_RS10840 - 2235294..2236307 (-) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=545643 LO006_RS10815 WP_000264037.1 2231512..2232147(-) (exbB) [Acinetobacter baumannii strain DB006]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=545643 LO006_RS10815 WP_000264037.1 2231512..2232147(-) (exbB) [Acinetobacter baumannii strain DB006]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393