Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   LO006_RS03025 Genome accession   NZ_CP087348
Coordinates   621850..622365 (-) Length   171 a.a.
NCBI ID   WP_000477147.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DB006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 616850..627365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO006_RS03000 - 617396..619039 (+) 1644 WP_000281766.1 nitrite/sulfite reductase -
  LO006_RS03005 - 619032..619517 (+) 486 WP_000935249.1 DUF934 domain-containing protein -
  LO006_RS03010 - 619600..619953 (+) 354 WP_000457787.1 multidrug efflux SMR transporter -
  LO006_RS03015 - 619996..620439 (-) 444 WP_001176580.1 VOC family protein -
  LO006_RS03020 - 620566..621741 (-) 1176 WP_000129968.1 thiolase family protein -
  LO006_RS03025 fimT 621850..622365 (-) 516 WP_000477147.1 GspH/FimT family pseudopilin Machinery gene
  LO006_RS03030 omp38 622747..623817 (+) 1071 WP_000777882.1 outer membrane protein Omp38 -
  LO006_RS03035 - 623942..624085 (-) 144 WP_162138624.1 hypothetical protein -
  LO006_RS03040 - 624104..625309 (-) 1206 WP_000512707.1 RtcB family protein -
  LO006_RS03045 - 625586..627046 (-) 1461 WP_000004971.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19587.81 Da        Isoelectric Point: 8.4960

>NTDB_id=545622 LO006_RS03025 WP_000477147.1 621850..622365(-) (fimT) [Acinetobacter baumannii strain DB006]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=545622 LO006_RS03025 WP_000477147.1 621850..622365(-) (fimT) [Acinetobacter baumannii strain DB006]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.373

97.076

0.421