Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   J1G47_RS11350 Genome accession   NZ_CP071487
Coordinates   2246756..2247394 (+) Length   212 a.a.
NCBI ID   WP_005711167.1    Uniprot ID   B8F752
Organism   Glaesserella parasuis strain YHP1818     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2241756..2252394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G47_RS11305 (J1G47_11305) rplP 2241789..2242199 (-) 411 WP_006249357.1 50S ribosomal protein L16 -
  J1G47_RS11310 (J1G47_11310) rpsC 2242212..2242916 (-) 705 WP_010786465.1 30S ribosomal protein S3 -
  J1G47_RS11315 (J1G47_11315) rplV 2242934..2243266 (-) 333 WP_005706427.1 50S ribosomal protein L22 -
  J1G47_RS11320 (J1G47_11320) rpsS 2243277..2243552 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  J1G47_RS11325 (J1G47_11325) rplB 2243581..2244402 (-) 822 WP_005711173.1 50S ribosomal protein L2 -
  J1G47_RS11330 (J1G47_11330) rplW 2244423..2244728 (-) 306 WP_005599290.1 50S ribosomal protein L23 -
  J1G47_RS11335 (J1G47_11335) rplD 2244725..2245327 (-) 603 WP_207326647.1 50S ribosomal protein L4 -
  J1G47_RS11340 (J1G47_11340) rplC 2245343..2245969 (-) 627 WP_010786462.1 50S ribosomal protein L3 -
  J1G47_RS11345 (J1G47_11345) rpsJ 2245986..2246297 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  J1G47_RS11350 (J1G47_11350) sxy/tfoX 2246756..2247394 (+) 639 WP_005711167.1 TfoX/Sxy family protein Regulator
  J1G47_RS11355 (J1G47_11355) fumC 2247541..2248935 (+) 1395 WP_010786461.1 class II fumarate hydratase -
  J1G47_RS11360 (J1G47_11360) - 2249117..2250295 (+) 1179 WP_021119276.1 acetyl-CoA carboxylase biotin carboxylase subunit family protein -
  J1G47_RS11365 (J1G47_11365) - 2250366..2251337 (-) 972 WP_012621529.1 IS110 family transposase -
  J1G47_RS11370 (J1G47_11370) - 2251592..2252350 (+) 759 WP_160403650.1 esterase family protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24705.70 Da        Isoelectric Point: 9.4406

>NTDB_id=545596 J1G47_RS11350 WP_005711167.1 2246756..2247394(+) (sxy/tfoX) [Glaesserella parasuis strain YHP1818]
MKYIDAKTQHIRNLLYPIIGETKAKTYFSYYGIMKDKAMFALYKDDKFYLHIPNHCLEENIAKNLSLLLDSQTGINLKSF
YLIPPDLLNDLQQVSHWVVESVKDILHTKQNQYMEKKKCIRTLPNMTIQLERTLKKLGVYSIDDLVDRGEIDIFVNLLKI
GVDADQALLFRLHGAINRQYIYTISDKTKQNLLNDADNALYAAGLRKRFNTR

Nucleotide


Download         Length: 639 bp        

>NTDB_id=545596 J1G47_RS11350 WP_005711167.1 2246756..2247394(+) (sxy/tfoX) [Glaesserella parasuis strain YHP1818]
ATGAAATACATTGATGCAAAAACACAACATATCCGTAATCTTCTTTACCCAATCATTGGCGAAACGAAAGCAAAAACCTA
TTTTTCCTATTATGGAATAATGAAAGATAAAGCTATGTTTGCTTTATACAAAGATGATAAATTCTATCTACACATACCAA
ATCATTGCTTAGAGGAAAACATAGCTAAAAATTTATCTCTTCTTCTCGACTCTCAGACTGGCATTAATCTAAAATCCTTC
TATTTAATCCCTCCCGATCTACTTAATGACTTACAACAAGTTTCACATTGGGTCGTCGAAAGTGTGAAAGATATTCTCCA
TACGAAACAAAATCAGTATATGGAAAAGAAAAAATGTATTCGGACGCTGCCGAATATGACAATACAACTCGAAAGGACAT
TAAAAAAACTAGGTGTCTACTCTATTGATGATTTAGTAGATAGAGGCGAGATTGATATTTTCGTCAACCTCCTTAAAATA
GGTGTTGATGCTGATCAAGCTTTATTATTTCGACTTCATGGAGCAATAAATCGACAATATATCTATACGATTTCAGACAA
AACAAAGCAGAATTTACTCAATGATGCAGATAATGCCTTGTATGCTGCTGGACTCCGAAAGCGATTTAATACTAGATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-103)

TfoX C-terminal domain (TfoX_C)

(118-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F752

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Glaesserella parasuis strain SC1401

73.239

100

0.736
  sxy/tfoX Actinobacillus suis H91-0380

43.128

99.528

0.429
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

38.647

97.642

0.377