Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LO011_RS08070 Genome accession   NZ_CP087340
Coordinates   1658563..1659198 (+) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain DB008     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1653563..1664198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO011_RS08045 - 1654403..1655416 (+) 1014 WP_258579656.1 aminoglycoside phosphotransferase family protein -
  LO011_RS08050 murU 1655416..1656105 (+) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  LO011_RS08055 rsmG 1656193..1656825 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LO011_RS08060 - 1656847..1657629 (+) 783 WP_000057212.1 ParA family protein -
  LO011_RS08065 - 1657626..1658513 (+) 888 WP_000023426.1 ParB/RepB/Spo0J family partition protein -
  LO011_RS08070 exbB 1658563..1659198 (+) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LO011_RS08075 - 1659214..1659642 (+) 429 WP_000669684.1 biopolymer transporter ExbD -
  LO011_RS08080 msbA 1659639..1661366 (+) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  LO011_RS08085 lpxK 1661369..1662379 (+) 1011 WP_258579657.1 tetraacyldisaccharide 4'-kinase -
  LO011_RS08090 kdsB 1662389..1663150 (+) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LO011_RS08095 - 1663162..1664142 (+) 981 WP_001075412.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=545483 LO011_RS08070 WP_000264037.1 1658563..1659198(+) (exbB) [Acinetobacter baumannii strain DB008]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=545483 LO011_RS08070 WP_000264037.1 1658563..1659198(+) (exbB) [Acinetobacter baumannii strain DB008]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393