Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   DDR89_RS03330 Genome accession   NZ_CP071460
Coordinates   636824..637261 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain CAMSA2002     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 631824..642261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDR89_RS03310 (DDR89_03310) kdpD 632312..634243 (+) 1932 WP_002893651.1 sensor histidine kinase KdpD -
  DDR89_RS03315 (DDR89_03315) uvrB 634238..636211 (-) 1974 WP_002856888.1 excinuclease ABC subunit UvrB -
  DDR89_RS03320 (DDR89_03320) - 636365..636595 (+) 231 WP_002852327.1 hypothetical protein -
  DDR89_RS03325 (DDR89_03325) - 636585..636827 (+) 243 WP_002854947.1 hypothetical protein -
  DDR89_RS03330 (DDR89_03330) Cj0683 636824..637261 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  DDR89_RS03335 (DDR89_03335) priA 637243..639096 (+) 1854 WP_075867336.1 primosomal protein N' -
  DDR89_RS03340 (DDR89_03340) cipA 639106..640500 (-) 1395 WP_002893647.1 DUF2972 domain-containing protein -
  DDR89_RS03345 (DDR89_03345) ispG 640646..641719 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=545462 DDR89_RS03330 WP_002852324.1 636824..637261(+) (Cj0683) [Campylobacter jejuni strain CAMSA2002]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=545462 DDR89_RS03330 WP_002852324.1 636824..637261(+) (Cj0683) [Campylobacter jejuni strain CAMSA2002]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCGAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGCTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1