Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   DDV75_RS05605 Genome accession   NZ_CP071459
Coordinates   1080398..1081357 (+) Length   319 a.a.
NCBI ID   WP_002875425.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CAMSA2038     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1060695..1094970 1080398..1081357 within 0


Gene organization within MGE regions


Location: 1060695..1094970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDV75_RS05510 (DDV75_05510) pglI 1060695..1061624 (-) 930 WP_002852770.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  DDV75_RS05515 (DDV75_05515) pglH 1061617..1062696 (-) 1080 WP_010891911.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  DDV75_RS05520 (DDV75_05520) pglK 1062693..1064387 (-) 1695 WP_002858308.1 ABC-type lipopolysaccharide transporter PglK -
  DDV75_RS05525 (DDV75_05525) galE 1064381..1065367 (-) 987 WP_002858414.1 UDP-glucose 4-epimerase GalE -
  DDV75_RS05530 (DDV75_05530) - 1065425..1066219 (-) 795 WP_002853812.1 3'-5' exonuclease -
  DDV75_RS05535 (DDV75_05535) waaC 1066285..1067313 (+) 1029 WP_002858077.1 lipopolysaccharide heptosyltransferase I -
  DDV75_RS05540 (DDV75_05540) htrB 1067303..1068190 (+) 888 WP_002858051.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  DDV75_RS05545 (DDV75_05545) - 1068187..1069734 (+) 1548 WP_002858148.1 glycosyltransferase -
  DDV75_RS05550 (DDV75_05550) - 1069738..1070910 (+) 1173 WP_002858013.1 glycosyltransferase family 2 protein -
  DDV75_RS05555 (DDV75_05555) - 1070894..1071889 (-) 996 WP_002858358.1 capsular polysaccharide synthesis protein -
  DDV75_RS05560 (DDV75_05560) - 1071947..1073116 (+) 1170 WP_002864814.1 glycosyltransferase family 2 protein -
  DDV75_RS05565 (DDV75_05565) wlaN 1073105..1074016 (-) 912 WP_002858039.1 beta-1,3 galactosyltransferase -
  DDV75_RS05570 (DDV75_05570) cstIII 1074071..1074955 (+) 885 WP_002858290.1 alpha-2,3-sialyltransferase -
  DDV75_RS05575 (DDV75_05575) neuB1 1074936..1075967 (+) 1032 WP_002858213.1 sialic acid synthase -
  DDV75_RS05580 (DDV75_05580) neuC 1075964..1077079 (+) 1116 WP_002858400.1 UDP-N-acetylglucosamine 2-epimerase -
  DDV75_RS08885 (DDV75_05585) - 1077076..1077990 (+) 915 Protein_1091 beta-1,4-N-acetylgalactosaminyltransferase -
  DDV75_RS08890 (DDV75_05590) - 1078024..1078686 (+) 663 WP_002881429.1 N-acylneuraminate cytidylyltransferase -
  DDV75_RS05595 (DDV75_05595) - 1078681..1079531 (-) 851 Protein_1093 glycosyltransferase -
  DDV75_RS05600 (DDV75_05600) waaV 1079515..1080339 (-) 825 WP_002858096.1 glycosyltransferase family 2 protein -
  DDV75_RS05605 (DDV75_05605) waaF 1080398..1081357 (+) 960 WP_002875425.1 lipopolysaccharide heptosyltransferase II Regulator
  DDV75_RS05610 (DDV75_05610) gmhA 1081338..1081898 (-) 561 WP_002858021.1 D-sedoheptulose 7-phosphate isomerase -
  DDV75_RS05615 (DDV75_05615) rfaE1 1081895..1083280 (-) 1386 WP_002858114.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  DDV75_RS05620 (DDV75_05620) rfaD 1083273..1084226 (-) 954 WP_002858041.1 ADP-glyceromanno-heptose 6-epimerase -
  DDV75_RS05625 (DDV75_05625) gmhB 1084227..1084787 (-) 561 WP_002853963.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  DDV75_RS05630 (DDV75_05630) - 1084869..1085171 (+) 303 WP_002852762.1 cytochrome c -
  DDV75_RS05635 (DDV75_05635) ccoS 1085194..1085400 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  DDV75_RS05640 (DDV75_05640) - 1085397..1087754 (-) 2358 WP_010891913.1 heavy metal translocating P-type ATPase -
  DDV75_RS05645 (DDV75_05645) rho 1087863..1089161 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  DDV75_RS05650 (DDV75_05650) dnaX 1089165..1090700 (+) 1536 WP_002858347.1 DNA polymerase III subunit gamma/tau -
  DDV75_RS05655 (DDV75_05655) - 1090780..1092681 (+) 1902 WP_002857910.1 NAD(P)/FAD-dependent oxidoreductase -
  DDV75_RS05660 (DDV75_05660) copA 1092671..1094776 (-) 2106 WP_019108716.1 copper-translocating P-type ATPase CopA -
  DDV75_RS05665 (DDV75_05665) - 1094776..1094970 (-) 195 WP_002882808.1 cation transporter -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36734.30 Da        Isoelectric Point: 10.2412

>NTDB_id=545440 DDV75_RS05605 WP_002875425.1 1080398..1081357(+) (waaF) [Campylobacter jejuni strain CAMSA2038]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=545440 DDV75_RS05605 WP_002875425.1 1080398..1081357(+) (waaF) [Campylobacter jejuni strain CAMSA2038]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1