Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LO010_RS10630 Genome accession   NZ_CP087335
Coordinates   2231273..2231908 (-) Length   211 a.a.
NCBI ID   WP_258580220.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DB053     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2226273..2236908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO010_RS10605 - 2226329..2227309 (-) 981 WP_001075408.1 DNA polymerase III subunit delta' -
  LO010_RS10610 kdsB 2227321..2228082 (-) 762 WP_000680702.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LO010_RS10615 lpxK 2228092..2229102 (-) 1011 WP_000050449.1 tetraacyldisaccharide 4'-kinase -
  LO010_RS10620 msbA 2229105..2230832 (-) 1728 WP_001070727.1 lipid A export permease/ATP-binding protein MsbA -
  LO010_RS10625 - 2230829..2231257 (-) 429 WP_258580219.1 biopolymer transporter ExbD -
  LO010_RS10630 exbB 2231273..2231908 (-) 636 WP_258580220.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LO010_RS10635 - 2231958..2232845 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  LO010_RS10640 - 2232842..2233624 (-) 783 WP_000057212.1 ParA family protein -
  LO010_RS10645 rsmG 2233646..2234278 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LO010_RS10650 murU 2234366..2235055 (-) 690 WP_000646465.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  LO010_RS10655 - 2235055..2236068 (-) 1014 WP_001096100.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23240.18 Da        Isoelectric Point: 6.4861

>NTDB_id=545420 LO010_RS10630 WP_258580220.1 2231273..2231908(-) (exbB) [Acinetobacter baumannii strain DB053]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDVSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=545420 LO010_RS10630 WP_258580220.1 2231273..2231908(-) (exbB) [Acinetobacter baumannii strain DB053]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGTCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCACCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTGATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.979

90.521

0.398