Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | LO010_RS08500 | Genome accession | NZ_CP087335 |
| Coordinates | 1788310..1789416 (+) | Length | 368 a.a. |
| NCBI ID | WP_258580476.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain DB053 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1783310..1794416
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LO010_RS08460 | - | 1783389..1783712 (+) | 324 | WP_258580475.1 | hypothetical protein | - |
| LO010_RS08465 | grxD | 1783759..1784100 (-) | 342 | WP_000138830.1 | Grx4 family monothiol glutaredoxin | - |
| LO010_RS08470 | - | 1784328..1785536 (+) | 1209 | WP_000129947.1 | aspartate aminotransferase family protein | - |
| LO010_RS08475 | - | 1785587..1786018 (-) | 432 | WP_000156920.1 | CBS domain-containing protein | - |
| LO010_RS08480 | - | 1786159..1786533 (-) | 375 | WP_001087274.1 | DUF2750 domain-containing protein | - |
| LO010_RS08485 | - | 1786967..1787200 (-) | 234 | WP_000616034.1 | hypothetical protein | - |
| LO010_RS08490 | - | 1787416..1787775 (+) | 360 | WP_000185571.1 | hypothetical protein | - |
| LO010_RS08495 | - | 1787876..1788202 (+) | 327 | WP_000955083.1 | hypothetical protein | - |
| LO010_RS08500 | pilA | 1788310..1789416 (+) | 1107 | WP_258580476.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| LO010_RS08505 | - | 1789605..1790201 (+) | 597 | WP_000102943.1 | nitroreductase family protein | - |
| LO010_RS08510 | - | 1790426..1791097 (+) | 672 | WP_000175349.1 | DUF2057 domain-containing protein | - |
| LO010_RS08515 | - | 1791155..1791454 (-) | 300 | WP_085916945.1 | cyd operon YbgE family protein | - |
| LO010_RS08520 | cydX | 1791455..1791556 (-) | 102 | WP_000270276.1 | cytochrome bd-I oxidase subunit CydX | - |
| LO010_RS08525 | cydB | 1791570..1792715 (-) | 1146 | WP_000575155.1 | cytochrome d ubiquinol oxidase subunit II | - |
| LO010_RS08530 | - | 1792712..1794298 (-) | 1587 | WP_000622647.1 | cytochrome ubiquinol oxidase subunit I | - |
Sequence
Protein
Download Length: 368 a.a. Molecular weight: 39920.67 Da Isoelectric Point: 4.9872
>NTDB_id=545410 LO010_RS08500 WP_258580476.1 1788310..1789416(+) (pilA) [Acinetobacter baumannii strain DB053]
MQQQSNMQNKFLIDAEIGDDDVTLPNLPAIDVPIVESPVKQEVKAEEVVEAAPSTEPEQPKSGFFGRMKEGLSKTRRNFT
DGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDP
NKSPYVILMVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVNFDAFE
SARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQAVGLTGITITKLD
GTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETEK
MQQQSNMQNKFLIDAEIGDDDVTLPNLPAIDVPIVESPVKQEVKAEEVVEAAPSTEPEQPKSGFFGRMKEGLSKTRRNFT
DGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDP
NKSPYVILMVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVNFDAFE
SARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQAVGLTGITITKLD
GTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETEK
Nucleotide
Download Length: 1107 bp
>NTDB_id=545410 LO010_RS08500 WP_258580476.1 1788310..1789416(+) (pilA) [Acinetobacter baumannii strain DB053]
ATGCAACAACAATCGAATATGCAAAATAAATTCTTGATAGATGCTGAGATCGGGGATGACGATGTCACATTGCCTAATTT
ACCTGCTATCGATGTTCCTATCGTTGAGTCACCTGTTAAGCAAGAAGTAAAAGCTGAAGAAGTTGTCGAGGCTGCACCGT
CTACAGAACCTGAGCAACCAAAATCTGGTTTCTTTGGGCGAATGAAAGAAGGCTTGAGCAAAACTCGTCGTAATTTCACC
GATGGGATGGTTAATATCTTAATTGGTGGGAAAGAAATTGATGATGAGTTGCTTGAAGAAGTCGAAGAGCAATTATTAGT
TGCAGATATTGGTGTTGATGCAACAAAAACGATTATTACCAACTTAACTGAACGTACTGCTCGTGGTGATTTGATCTATT
CACATTCACTTTATAAAGCCTTGCAAGAAGAGTTAGTTGCTTTGCTTGCTCCACGTGTGAAGCCTTTGCATATTGACCCT
AATAAATCACCTTATGTGATTTTAATGGTTGGGGTAAATGGTGTTGGAAAAACAACAACAATTGGTAAATTAGCGAAGCG
TTTACAAGGTGAAGGCAAAAAAGTGATGTTGGCGGCAGGTGATACATTCCGTGCTGCTGCTACTGAACAATTGCAAATCT
GGGGTGAGCGTAACGATATTGCTGTTGTTGCTCAAGGTCATGGTGCCGATAGTGCATCAGTAAATTTTGATGCTTTTGAA
AGTGCGCGAGCTAAAGGTATTGATGTACTGATTGCTGATACTGCGGGCCGTTTGCATAACAAAAGTAATTTGATGGAAGA
GCTTAAGAAAGTTAAGCGTGTTATGCAAAAAATTGATGCAACAGCGCCTCATGAAATTATGTTGGTTGTAGATGCGGGTA
CAGGACAAAATGCAATCAACCAAGTACAAGAATTTGATCAAGCTGTCGGTTTAACAGGTATTACTATTACTAAGCTGGAT
GGTACAGCAAAAGGTGGAGTATTATTTAATATTGCTAGTCGTACTCATGTGCCAATTCGTTTCATTGGTGTGGGTGAAAA
AATTGATGATTTAAGACCATTCTCGGCGAAATCATTTGTTGCAGCACTATTTGAAACTGAAAAATAA
ATGCAACAACAATCGAATATGCAAAATAAATTCTTGATAGATGCTGAGATCGGGGATGACGATGTCACATTGCCTAATTT
ACCTGCTATCGATGTTCCTATCGTTGAGTCACCTGTTAAGCAAGAAGTAAAAGCTGAAGAAGTTGTCGAGGCTGCACCGT
CTACAGAACCTGAGCAACCAAAATCTGGTTTCTTTGGGCGAATGAAAGAAGGCTTGAGCAAAACTCGTCGTAATTTCACC
GATGGGATGGTTAATATCTTAATTGGTGGGAAAGAAATTGATGATGAGTTGCTTGAAGAAGTCGAAGAGCAATTATTAGT
TGCAGATATTGGTGTTGATGCAACAAAAACGATTATTACCAACTTAACTGAACGTACTGCTCGTGGTGATTTGATCTATT
CACATTCACTTTATAAAGCCTTGCAAGAAGAGTTAGTTGCTTTGCTTGCTCCACGTGTGAAGCCTTTGCATATTGACCCT
AATAAATCACCTTATGTGATTTTAATGGTTGGGGTAAATGGTGTTGGAAAAACAACAACAATTGGTAAATTAGCGAAGCG
TTTACAAGGTGAAGGCAAAAAAGTGATGTTGGCGGCAGGTGATACATTCCGTGCTGCTGCTACTGAACAATTGCAAATCT
GGGGTGAGCGTAACGATATTGCTGTTGTTGCTCAAGGTCATGGTGCCGATAGTGCATCAGTAAATTTTGATGCTTTTGAA
AGTGCGCGAGCTAAAGGTATTGATGTACTGATTGCTGATACTGCGGGCCGTTTGCATAACAAAAGTAATTTGATGGAAGA
GCTTAAGAAAGTTAAGCGTGTTATGCAAAAAATTGATGCAACAGCGCCTCATGAAATTATGTTGGTTGTAGATGCGGGTA
CAGGACAAAATGCAATCAACCAAGTACAAGAATTTGATCAAGCTGTCGGTTTAACAGGTATTACTATTACTAAGCTGGAT
GGTACAGCAAAAGGTGGAGTATTATTTAATATTGCTAGTCGTACTCATGTGCCAATTCGTTTCATTGGTGTGGGTGAAAA
AATTGATGATTTAAGACCATTCTCGGCGAAATCATTTGTTGCAGCACTATTTGAAACTGAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
52.038 |
86.685 |
0.451 |