Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LO010_RS03615 Genome accession   NZ_CP087335
Coordinates   730568..730930 (+) Length   120 a.a.
NCBI ID   WP_258580404.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DB053     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 725568..735930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO010_RS03600 - 728062..729180 (-) 1119 WP_001260818.1 efflux RND transporter periplasmic adaptor subunit -
  LO010_RS03605 - 729240..729878 (-) 639 WP_002027721.1 hypothetical protein -
  LO010_RS03610 pilG 730161..730544 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  LO010_RS03615 pilH 730568..730930 (+) 363 WP_258580404.1 PleD family two-component system response regulator Machinery gene
  LO010_RS03620 - 730991..731527 (+) 537 WP_000729762.1 chemotaxis protein CheW -
  LO010_RS03625 - 731574..733652 (+) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13509.56 Da        Isoelectric Point: 4.9102

>NTDB_id=545397 LO010_RS03615 WP_258580404.1 730568..730930(+) (pilH) [Acinetobacter baumannii strain DB053]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQAMRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=545397 LO010_RS03615 WP_258580404.1 730568..730930(+) (pilH) [Acinetobacter baumannii strain DB053]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAATGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCGGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392