Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JYG23_RS06610 Genome accession   NZ_CP071445
Coordinates   1317018..1318379 (-) Length   453 a.a.
NCBI ID   WP_207237696.1    Uniprot ID   A0A974XF01
Organism   Sedimentibacter sp. zth1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1312018..1323379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG23_RS06585 (JYG23_06585) - 1313520..1313903 (-) 384 WP_207237691.1 DUF4363 family protein -
  JYG23_RS06590 (JYG23_06590) - 1313900..1314556 (-) 657 WP_207237692.1 DUF421 domain-containing protein -
  JYG23_RS06595 (JYG23_06595) - 1314652..1315755 (-) 1104 WP_207237693.1 PIN/TRAM domain-containing protein -
  JYG23_RS06600 (JYG23_06600) - 1315843..1316328 (-) 486 WP_207237694.1 CarD family transcriptional regulator -
  JYG23_RS06605 (JYG23_06605) - 1316605..1316997 (+) 393 WP_207237695.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  JYG23_RS06610 (JYG23_06610) radA 1317018..1318379 (-) 1362 WP_207237696.1 DNA repair protein RadA Machinery gene
  JYG23_RS06615 (JYG23_06615) - 1318643..1319077 (+) 435 WP_207237697.1 hypothetical protein -
  JYG23_RS06620 (JYG23_06620) - 1319087..1319455 (+) 369 WP_207237698.1 DUF2089 domain-containing protein -
  JYG23_RS06625 (JYG23_06625) - 1319485..1319868 (+) 384 WP_242631649.1 hypothetical protein -
  JYG23_RS06630 (JYG23_06630) - 1320151..1320687 (+) 537 WP_207237972.1 helix-turn-helix domain-containing protein -
  JYG23_RS06635 (JYG23_06635) potA 1320701..1321744 (+) 1044 WP_207237699.1 spermidine/putrescine ABC transporter ATP-binding protein -
  JYG23_RS06640 (JYG23_06640) - 1321744..1322586 (+) 843 WP_207237700.1 ABC transporter permease -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49724.53 Da        Isoelectric Point: 7.5444

>NTDB_id=545369 JYG23_RS06610 WP_207237696.1 1317018..1318379(-) (radA) [Sedimentibacter sp. zth1]
MAKVKSKFVCQNCGYESPKWMGKCSSCGEWNSFVEELDIKAKDVKNQRGLSNKGKVERIDSIATIIQSRVKTGIKELDRV
LGGGIVKSSLILVGGDPGIGKSTLLLQVANNASLQDLKVLYVSGEESAEQIKLRADRLGVSSGELYILSETNVEVIKNFI
DREEPDILILDSVQTIYSPEIVSAPGSVSQVREITSIFMRITKSKQMATFIVGHVTKQGDIAGPRVLEHMVDTVLYFEGE
RHFSYRILRAVKNRFGSTNEIGIFEMRDKGLVEVDNPSEIFIDGRPKDAYGTVVTAALEGTRPMLLEIQSLVSYSPVGFS
KRITTGIDNNRAAILIAVLEKKIGLTLQNCDIFINVTGGLQLKEPASDLAVVCAIASSFKEKPINCQTIIMGEIGLTGEI
RGINSITNRLIEAQKMGFTKAIIPEANFKAAKEVKEIKLFSANNINQVIEELF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=545369 JYG23_RS06610 WP_207237696.1 1317018..1318379(-) (radA) [Sedimentibacter sp. zth1]
ATGGCTAAGGTTAAAAGTAAATTTGTATGCCAAAACTGTGGATATGAAAGCCCAAAGTGGATGGGGAAATGCTCATCATG
TGGTGAGTGGAATTCATTTGTTGAAGAGCTTGATATTAAAGCAAAAGACGTGAAAAATCAAAGAGGATTGAGTAACAAAG
GAAAAGTTGAAAGAATTGATAGCATAGCTACTATTATTCAATCAAGAGTTAAAACAGGCATCAAAGAATTAGATAGGGTT
TTAGGAGGAGGGATTGTTAAAAGTTCATTGATACTGGTTGGCGGTGACCCTGGAATAGGCAAATCTACTCTTCTATTACA
GGTTGCTAACAATGCGTCGTTACAAGACTTAAAAGTATTATATGTGTCTGGAGAAGAATCAGCAGAACAGATAAAGTTAA
GAGCTGATAGGCTAGGTGTATCAAGTGGAGAATTATACATTTTATCAGAAACAAATGTAGAGGTAATCAAGAATTTCATT
GATAGAGAAGAGCCTGATATTTTAATTCTTGATTCAGTACAAACTATATATAGTCCAGAAATTGTTTCAGCCCCGGGAAG
CGTAAGTCAAGTAAGAGAGATAACATCAATTTTTATGAGAATTACAAAATCAAAACAAATGGCTACATTCATAGTGGGAC
ATGTTACAAAGCAAGGTGATATTGCTGGGCCTAGAGTTCTTGAGCATATGGTTGATACAGTGCTTTACTTTGAAGGAGAA
AGACATTTTTCTTATAGAATACTAAGAGCAGTTAAAAATAGATTTGGTTCTACAAATGAAATCGGTATATTTGAGATGAG
AGATAAAGGACTTGTAGAGGTAGACAATCCATCTGAAATATTTATAGATGGTAGACCTAAGGATGCGTATGGTACCGTGG
TAACGGCAGCACTTGAGGGAACAAGACCAATGTTACTTGAGATACAATCACTTGTAAGTTATTCTCCAGTAGGATTTTCA
AAAAGAATAACTACTGGAATTGATAATAATAGAGCAGCAATTTTAATAGCTGTTTTAGAGAAAAAAATAGGATTAACTTT
GCAAAATTGTGATATTTTTATTAATGTAACTGGTGGTCTTCAATTAAAAGAACCTGCTAGTGACTTAGCTGTGGTTTGTG
CAATTGCATCAAGCTTTAAAGAAAAGCCAATTAATTGTCAAACTATCATAATGGGAGAGATAGGACTTACAGGTGAAATA
AGAGGTATAAATTCGATAACTAATAGGCTAATTGAAGCACAAAAAATGGGATTTACAAAAGCAATAATTCCAGAAGCTAA
TTTCAAGGCAGCTAAAGAAGTAAAAGAAATCAAATTATTTAGTGCTAATAATATAAATCAAGTAATAGAGGAGCTATTTT
GA

Domains

Predicted by InterproScan.

KaiC (ATPase)

(70-143)

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

55.85

100

0.559
  radA Streptococcus mitis NCTC 12261

54.746

100

0.547
  radA Streptococcus pneumoniae Rx1

54.746

100

0.547
  radA Streptococcus pneumoniae D39

54.746

100

0.547
  radA Streptococcus pneumoniae R6

54.746

100

0.547
  radA Streptococcus pneumoniae TIGR4

54.746

100

0.547
  radA Streptococcus mitis SK321

54.525

100

0.545