Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LO004_RS11225 Genome accession   NZ_CP087331
Coordinates   2342986..2343621 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain LMG994     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2337986..2348621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO004_RS11200 - 2338042..2339022 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  LO004_RS11205 kdsB 2339034..2339795 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LO004_RS11210 lpxK 2339805..2340815 (-) 1011 WP_000050466.1 tetraacyldisaccharide 4'-kinase -
  LO004_RS11215 msbA 2340818..2342545 (-) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  LO004_RS11220 - 2342542..2342970 (-) 429 WP_000669683.1 biopolymer transporter ExbD -
  LO004_RS11225 exbB 2342986..2343621 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LO004_RS11230 - 2343671..2344558 (-) 888 WP_000023431.1 ParB/RepB/Spo0J family partition protein -
  LO004_RS11235 - 2344555..2345337 (-) 783 WP_000057212.1 ParA family protein -
  LO004_RS11240 rsmG 2345359..2345991 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LO004_RS11245 murU 2346079..2346768 (-) 690 WP_000646462.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  LO004_RS11250 - 2346768..2347781 (-) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=545345 LO004_RS11225 WP_000264037.1 2342986..2343621(-) (exbB) [Acinetobacter baumannii strain LMG994]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=545345 LO004_RS11225 WP_000264037.1 2342986..2343621(-) (exbB) [Acinetobacter baumannii strain LMG994]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCACCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTGATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393