Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LO004_RS04100 Genome accession   NZ_CP087331
Coordinates   841149..841511 (+) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain LMG994     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 836149..846511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO004_RS04085 - 838643..839761 (-) 1119 WP_001260825.1 efflux RND transporter periplasmic adaptor subunit -
  LO004_RS04090 - 839821..840459 (-) 639 WP_032059686.1 hypothetical protein -
  LO004_RS04095 pilG 840742..841125 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  LO004_RS04100 pilH 841149..841511 (+) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  LO004_RS04105 - 841572..842108 (+) 537 WP_000729760.1 chemotaxis protein CheW -
  LO004_RS04110 - 842155..844233 (+) 2079 WP_000505933.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=545324 LO004_RS04100 WP_000101096.1 841149..841511(+) (pilH) [Acinetobacter baumannii strain LMG994]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=545324 LO004_RS04100 WP_000101096.1 841149..841511(+) (pilH) [Acinetobacter baumannii strain LMG994]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCGGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392