Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   LO004_RS03960 Genome accession   NZ_CP087331
Coordinates   811922..812437 (-) Length   171 a.a.
NCBI ID   WP_000477156.1    Uniprot ID   A0ABX6CJ21
Organism   Acinetobacter baumannii strain LMG994     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 806922..817437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO004_RS03935 - 807468..809111 (+) 1644 WP_000281766.1 nitrite/sulfite reductase -
  LO004_RS03940 - 809104..809589 (+) 486 WP_000935247.1 DUF934 domain-containing protein -
  LO004_RS03945 - 809672..810025 (+) 354 WP_000457783.1 multidrug efflux SMR transporter -
  LO004_RS03950 - 810068..810511 (-) 444 WP_001176580.1 VOC family protein -
  LO004_RS03955 - 810638..811813 (-) 1176 WP_000129968.1 thiolase family protein -
  LO004_RS03960 fimT 811922..812437 (-) 516 WP_000477156.1 GspH/FimT family pseudopilin Machinery gene
  LO004_RS03965 omp38 812819..813889 (+) 1071 WP_000777880.1 outer membrane protein Omp38 -
  LO004_RS03970 - 814014..814172 (-) 159 WP_000692859.1 hypothetical protein -
  LO004_RS03975 - 814176..815381 (-) 1206 WP_000512704.1 RtcB family protein -
  LO004_RS03980 - 815658..817118 (-) 1461 WP_000004971.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19594.80 Da        Isoelectric Point: 8.8196

>NTDB_id=545322 LO004_RS03960 WP_000477156.1 811922..812437(-) (fimT) [Acinetobacter baumannii strain LMG994]
MFKSPGFTTVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=545322 LO004_RS03960 WP_000477156.1 811922..812437(-) (fimT) [Acinetobacter baumannii strain LMG994]
ATGTTTAAATCTCCTGGTTTTACTACAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTACTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427