Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   J1F34_RS00475 Genome accession   NZ_CP071441
Coordinates   100717..101346 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EcPF20     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 95717..106346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1F34_RS00455 (J1F34_00455) ycbZ 96107..97867 (-) 1761 WP_000156526.1 Lon protease family protein -
  J1F34_RS00460 (J1F34_00460) matP 98053..98505 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  J1F34_RS00465 (J1F34_00465) ompA 98580..99632 (-) 1053 WP_000750419.1 porin OmpA -
  J1F34_RS00470 (J1F34_00470) sulA 99989..100498 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  J1F34_RS00475 (J1F34_00475) sxy/tfoX 100717..101346 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  J1F34_RS00480 (J1F34_00480) yccS 101309..103471 (-) 2163 WP_000875044.1 YccS family putative transporter -
  J1F34_RS00485 (J1F34_00485) yccF 103481..103927 (-) 447 WP_001261235.1 YccF domain-containing protein -
  J1F34_RS00490 (J1F34_00490) helD 104050..106104 (+) 2055 WP_001315388.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=545320 J1F34_RS00475 WP_000839153.1 100717..101346(+) (sxy/tfoX) [Escherichia coli strain EcPF20]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=545320 J1F34_RS00475 WP_000839153.1 100717..101346(+) (sxy/tfoX) [Escherichia coli strain EcPF20]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1