Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOZ98_RS10570 Genome accession   NZ_CP087328
Coordinates   2121482..2122117 (-) Length   211 a.a.
NCBI ID   WP_000264042.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC074     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2116482..2127117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ98_RS10545 - 2116538..2117518 (-) 981 WP_001075418.1 DNA polymerase III subunit delta' -
  LOZ98_RS10550 kdsB 2117530..2118291 (-) 762 WP_000680701.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOZ98_RS10555 lpxK 2118301..2119311 (-) 1011 WP_000050452.1 tetraacyldisaccharide 4'-kinase -
  LOZ98_RS10560 msbA 2119314..2121041 (-) 1728 WP_001070738.1 lipid A export permease/ATP-binding protein MsbA -
  LOZ98_RS10565 - 2121038..2121466 (-) 429 WP_000669680.1 biopolymer transporter ExbD -
  LOZ98_RS10570 exbB 2121482..2122117 (-) 636 WP_000264042.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOZ98_RS10575 - 2122167..2123054 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  LOZ98_RS10580 - 2123051..2123833 (-) 783 WP_000057212.1 ParA family protein -
  LOZ98_RS10585 rsmG 2123855..2124487 (-) 633 WP_000553196.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LOZ98_RS10590 murU 2124575..2125264 (-) 690 WP_004738901.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  LOZ98_RS10595 - 2125264..2126277 (-) 1014 WP_258580083.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23224.13 Da        Isoelectric Point: 6.2379

>NTDB_id=545264 LOZ98_RS10570 WP_000264042.1 2121482..2122117(-) (exbB) [Acinetobacter baumannii strain OC074]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEYQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=545264 LOZ98_RS10570 WP_000264042.1 2121482..2122117(-) (exbB) [Acinetobacter baumannii strain OC074]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TTATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGTATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAGAAAAATATTAA
CTTCTTAGGAACCTTAAGTGCTATTGCGCCTTTACTAGGACTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCGCTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393