Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J1C59_RS15860 Genome accession   NZ_CP071405
Coordinates   3357577..3358959 (-) Length   460 a.a.
NCBI ID   WP_128085969.1    Uniprot ID   -
Organism   Pantoea deleyi strain LMG24200     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3352577..3363959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1C59_RS15835 - 3353355..3353519 (+) 165 WP_128085964.1 YhfG family protein -
  J1C59_RS15840 - 3353532..3354134 (+) 603 WP_128085965.1 putative adenosine monophosphate-protein transferase Fic -
  J1C59_RS15845 - 3354115..3355011 (-) 897 WP_128085966.1 LysR family transcriptional regulator -
  J1C59_RS15850 - 3355213..3356214 (+) 1002 WP_128085967.1 zinc-binding alcohol dehydrogenase family protein -
  J1C59_RS15855 nadR 3356260..3357501 (-) 1242 WP_128085968.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  J1C59_RS15860 radA 3357577..3358959 (-) 1383 WP_128085969.1 DNA repair protein RadA Machinery gene
  J1C59_RS15865 serB 3358973..3359950 (-) 978 WP_128085970.1 phosphoserine phosphatase -
  J1C59_RS15870 - 3360058..3360708 (+) 651 WP_128085971.1 YtjB family periplasmic protein -
  J1C59_RS15875 yjjG 3360795..3361475 (-) 681 WP_128085972.1 pyrimidine 5'-nucleotidase -
  J1C59_RS15880 rimI 3361494..3361934 (-) 441 WP_128085973.1 ribosomal protein S18-alanine N-acetyltransferase -
  J1C59_RS15885 - 3361906..3362316 (-) 411 WP_128085974.1 DNA polymerase III subunit psi -
  J1C59_RS15890 rsmC 3362423..3363454 (+) 1032 WP_140917035.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49391.03 Da        Isoelectric Point: 7.4222

>NTDB_id=545252 J1C59_RS15860 WP_128085969.1 3357577..3358959(-) (radA) [Pantoea deleyi strain LMG24200]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSST
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQVMCRLSEGMKTLYVTGEESLQQVAMRAHRLGLPTENVNMLSETSIE
QICLIAEQEQPQLMVIDSIQVMHMAEIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEVTSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETGADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERISEAAKHGFRRAIVPAGNAPKKPIAGMQVFSVKKLADALAILDEL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=545252 J1C59_RS15860 WP_128085969.1 3357577..3358959(-) (radA) [Pantoea deleyi strain LMG24200]
TTGGCCAAAGCGGCAAAACGCGCATTTGTCTGTAACGAATGTGGCGCAGATTACCCACGCTGGCAGGGGCAATGCAGCGC
CTGTCACGCCTGGAACACCATCACCGAGGTGCGCATCGCCGCCTCGCCTGCGGCTGCGCGTAACGAGCGCCTGAGCGGTT
ACGCCGGCAGCGCCGGCACCAGCCGGGTGCAGAAACTCTCTGAAATCAGCCTGGAGGCGCTGCCGCGTTTCTCCTCCACC
TTCAAAGAGTTTGACCGGGTGCTGGGCGGCGGCGTCGTGCCGGGCAGCGCGATCCTGATCGGCGGCAACCCTGGCGCCGG
GAAATCGACGCTGCTGCTGCAGGTGATGTGCCGGCTGTCGGAGGGGATGAAAACCCTCTACGTGACCGGTGAAGAGTCGC
TGCAACAGGTCGCGATGCGCGCCCATCGTCTGGGATTGCCCACCGAAAATGTGAATATGCTGTCGGAAACCAGCATTGAG
CAGATCTGCCTGATCGCCGAGCAGGAGCAGCCGCAACTGATGGTGATCGACTCGATCCAGGTGATGCATATGGCGGAGAT
CCAGTCGTCACCCGGCAGCGTCGCCCAGGTGCGCGAAACCGCCGCCTATCTGACGCGCTTTGCCAAAACGCGCGGCGTCG
CGATCATTATGGTCGGCCACGTCACCAAAGATGGTTCGCTGGCGGGGCCGAAAGTGCTGGAGCACTGCATCGACTGTTCG
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACGCTGCGCAGCCACAAAAACCGCTTCGGCGCGGTCAATGAACT
GGGCGTGTTTGCCATGACCGAGCAGGGCATGCGCGAAGTCAGCAACCCCTCAGCGATCTTTCTGTCGCGCGGCGAAGAGG
TGACTTCCGGCAGCTCCGTGATGGTGCTGTGGGAGGGAACGCGGCCGCTGCTGGTGGAGATTCAGGCGCTGGTCGATCAC
TCGATGATGGGCAATCCGCGCCGTGTGGCGGTCGGGCTGGAGCAGAACCGTCTGGCGATTCTGCTGGCCGTGCTGCATCG
ACACGGTGGACTGCAGATGGCGGACCAGGATGTGTTCGTCAACGTCGTCGGCGGCGTGAAGGTCACCGAAACCGGTGCGG
ACCTGGCGCTGATGCTGTCGATGGTATCGAGTCTGCGCGACCGTCCGCTGCCGCAGGATCTGGTGATCTTCGGCGAAGTC
GGCCTGGCCGGTGAAATCCGTCCGGTGCCCAGCGGCCAGGAACGCATCTCCGAAGCGGCGAAGCACGGCTTCAGACGCGC
GATTGTGCCCGCCGGCAACGCACCGAAAAAACCGATTGCCGGGATGCAGGTGTTCAGCGTGAAGAAGCTGGCCGATGCGC
TGGCCATTCTGGACGAACTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(87-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.156

100

0.483
  radA Streptococcus mitis NCTC 12261

44.009

99.783

0.439
  radA Streptococcus mitis SK321

43.64

99.13

0.433
  radA Streptococcus pneumoniae Rx1

45.012

93.696

0.422
  radA Streptococcus pneumoniae D39

45.012

93.696

0.422
  radA Streptococcus pneumoniae R6

45.012

93.696

0.422
  radA Streptococcus pneumoniae TIGR4

45.012

93.696

0.422