Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LOZ98_RS03465 Genome accession   NZ_CP087328
Coordinates   696147..696509 (+) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain OC074     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 691147..701509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ98_RS03450 - 693641..694759 (-) 1119 WP_001260815.1 efflux RND transporter periplasmic adaptor subunit -
  LOZ98_RS03455 - 694819..695457 (-) 639 WP_004739833.1 hypothetical protein -
  LOZ98_RS03460 pilG 695740..696123 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  LOZ98_RS03465 pilH 696147..696509 (+) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  LOZ98_RS03470 - 696570..697106 (+) 537 WP_000729759.1 chemotaxis protein CheW -
  LOZ98_RS03475 - 697153..697473 (+) 321 Protein_665 chemotaxis protein -
  LOZ98_RS03480 dapE 697512..698648 (-) 1137 WP_001016581.1 succinyl-diaminopimelate desuccinylase -
  LOZ98_RS03485 - 698774..698917 (-) 144 WP_001984826.1 entericidin A/B family lipoprotein -
  LOZ98_RS03490 - 699016..699924 (-) 909 WP_119047961.1 DUF1853 family protein -
  LOZ98_RS03495 - 700029..700397 (+) 369 WP_001259501.1 YbaN family protein -
  LOZ98_RS03500 elsL 700548..701051 (+) 504 WP_000077299.1 cell wall-recycling L,D-carboxypeptidase ElsL -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=545244 LOZ98_RS03465 WP_000101096.1 696147..696509(+) (pilH) [Acinetobacter baumannii strain OC074]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=545244 LOZ98_RS03465 WP_000101096.1 696147..696509(+) (pilH) [Acinetobacter baumannii strain OC074]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392