Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LO013_RS10030 Genome accession   NZ_CP087325
Coordinates   2070892..2071527 (-) Length   211 a.a.
NCBI ID   WP_000264042.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC073     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2065892..2076527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO013_RS10005 - 2065948..2066928 (-) 981 WP_001075418.1 DNA polymerase III subunit delta' -
  LO013_RS10010 kdsB 2066940..2067701 (-) 762 WP_000680701.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LO013_RS10015 lpxK 2067711..2068721 (-) 1011 WP_004738904.1 tetraacyldisaccharide 4'-kinase -
  LO013_RS10020 msbA 2068724..2070451 (-) 1728 WP_001070738.1 lipid A export permease/ATP-binding protein MsbA -
  LO013_RS10025 - 2070448..2070876 (-) 429 WP_000669680.1 biopolymer transporter ExbD -
  LO013_RS10030 exbB 2070892..2071527 (-) 636 WP_000264042.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LO013_RS10035 - 2071577..2072464 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  LO013_RS10040 - 2072461..2073243 (-) 783 WP_000057212.1 ParA family protein -
  LO013_RS10045 rsmG 2073265..2073897 (-) 633 WP_000553196.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LO013_RS10050 murU 2073985..2074674 (-) 690 WP_004738901.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  LO013_RS10055 - 2074674..2075687 (-) 1014 WP_001096098.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23224.13 Da        Isoelectric Point: 6.2379

>NTDB_id=545187 LO013_RS10030 WP_000264042.1 2070892..2071527(-) (exbB) [Acinetobacter baumannii strain OC073]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEYQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=545187 LO013_RS10030 WP_000264042.1 2070892..2071527(-) (exbB) [Acinetobacter baumannii strain OC073]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TTATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGTATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAGAAAAATATTAA
CTTCTTAGGAACCTTAAGTGCTATTGCGCCTTTACTAGGACTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCGCTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393