Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JZ655_RS07370 Genome accession   NZ_CP071383
Coordinates   1572723..1573328 (+) Length   201 a.a.
NCBI ID   WP_207293416.1    Uniprot ID   -
Organism   Leclercia pneumoniae strain 49125     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1567723..1578328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZ655_RS07350 (JZ655_07350) - 1568123..1569883 (-) 1761 WP_207293414.1 Lon protease family protein -
  JZ655_RS07355 (JZ655_07355) matP 1570069..1570521 (+) 453 WP_040076287.1 macrodomain Ter protein MatP -
  JZ655_RS07360 (JZ655_07360) ompA 1570585..1571640 (-) 1056 WP_207293415.1 porin OmpA -
  JZ655_RS07365 (JZ655_07365) sulA 1571997..1572506 (-) 510 WP_046886668.1 SOS-induced cell division inhibitor SulA -
  JZ655_RS07370 (JZ655_07370) sxy/tfoX 1572723..1573328 (+) 606 WP_207293416.1 TfoX/Sxy family DNA transformation protein Regulator
  JZ655_RS07375 (JZ655_07375) yccS 1573331..1575466 (-) 2136 WP_207293417.1 YccS family putative transporter -
  JZ655_RS07380 (JZ655_07380) - 1575482..1575931 (-) 450 WP_040076281.1 YccF domain-containing protein -
  JZ655_RS07385 (JZ655_07385) helD 1576054..1578108 (+) 2055 WP_207293418.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23277.00 Da        Isoelectric Point: 9.2610

>NTDB_id=545135 JZ655_RS07370 WP_207293416.1 1572723..1573328(+) (sxy/tfoX) [Leclercia pneumoniae strain 49125]
MKKISYERIYQSEKYLSSLGEVEHRALFGGYALAVDNTVFAMVSAGELYLRACEESASYFVKQGASFLTLLKRGRPVLLN
YYRVDETLWQDQERLLRLSSFALEAARRERCKRFKQDRLKDLPNLTFQLELLLCEAGIPNEEALRTLGAEACWLRIKRLN
KHLSYKVLFALEGAIQGLHEAALPAIRRRELIEWYKTLPAQ

Nucleotide


Download         Length: 606 bp        

>NTDB_id=545135 JZ655_RS07370 WP_207293416.1 1572723..1573328(+) (sxy/tfoX) [Leclercia pneumoniae strain 49125]
ATGAAAAAGATATCCTATGAACGGATCTATCAATCTGAAAAATACCTGTCCTCATTGGGAGAAGTAGAGCATCGCGCGTT
GTTTGGCGGGTACGCACTGGCCGTAGACAATACGGTGTTCGCCATGGTTTCAGCAGGCGAGTTGTACCTGCGGGCCTGCG
AAGAAAGCGCCTCCTATTTTGTCAAACAGGGCGCCTCATTCTTAACGCTGTTAAAACGTGGGCGGCCCGTCTTACTAAAC
TATTATCGGGTGGATGAGACCCTCTGGCAGGATCAAGAGCGACTGCTACGGCTCTCGTCGTTTGCGCTCGAAGCCGCCCG
CCGGGAACGCTGTAAACGCTTTAAACAGGACCGCCTGAAAGATCTCCCCAACCTGACCTTCCAACTCGAACTGCTTCTAT
GCGAAGCCGGAATTCCAAACGAAGAGGCGTTACGCACACTCGGCGCTGAGGCATGCTGGTTGAGGATCAAGCGGTTGAAT
AAGCATCTTAGTTACAAAGTGCTGTTTGCACTGGAAGGGGCGATCCAGGGGCTACATGAAGCGGCTCTCCCGGCAATACG
ACGCCGGGAGCTGATTGAGTGGTATAAAACATTGCCAGCGCAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(15-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.921

100

0.582