Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   KW3_RS0107510 Genome accession   NZ_AKGH01000001
Coordinates   1665240..1665854 (-) Length   204 a.a.
NCBI ID   WP_000580359.1    Uniprot ID   Q9KR01
Organism   Vibrio cholerae H1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1660240..1670854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW3_RS0107485 ybgE 1660551..1660868 (-) 318 WP_001286617.1 cyd operon protein YbgE -
  KW3_RS0107490 cydX 1660861..1660968 (-) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  KW3_RS0107495 cydB 1660981..1662117 (-) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  KW3_RS0107500 cydA 1662135..1663721 (-) 1587 WP_000568056.1 cytochrome ubiquinol oxidase subunit I -
  KW3_RS0107505 ruvB 1664180..1665184 (-) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  KW3_RS0107510 ruvA 1665240..1665854 (-) 615 WP_000580359.1 Holliday junction branch migration protein RuvA Machinery gene
  KW3_RS0107515 ruvC 1665951..1666472 (-) 522 WP_000111361.1 crossover junction endodeoxyribonuclease RuvC -
  KW3_RS0107520 cysS 1666560..1667939 (-) 1380 WP_000913180.1 cysteine--tRNA ligase -
  KW3_RS0107525 - 1668085..1668579 (+) 495 WP_000631302.1 peptidylprolyl isomerase -
  KW3_RS0107530 lpxH 1668620..1669360 (+) 741 WP_000557000.1 UDP-2,3-diacylglucosamine diphosphatase -
  KW3_RS0107535 - 1669456..1670670 (+) 1215 WP_001881603.1 EAL and HDOD domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22008.70 Da        Isoelectric Point: 5.0954

>NTDB_id=54513 KW3_RS0107510 WP_000580359.1 1665240..1665854(-) (ruvA) [Vibrio cholerae H1]
MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVSERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=54513 KW3_RS0107510 WP_000580359.1 1665240..1665854(-) (ruvA) [Vibrio cholerae H1]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAGTTACCTCCTCAAATTTTGATTGAGGTCGGTGGTATTGGCTATGA
AGTGCAAATGCCGATGAGCTGTATTTATGAACTGCCGAATATTGGGGAAGAAGCCATCATTTATACCCACTTTGTAGTTC
GAGAAGATGCACAGCTACTTTATGGCTTTAATACCGTTAGCGAACGCGCTCTGTTTCGTGAAGTAATCAAAGCCAATGGC
GTAGGGCCGAAAATGGGGCTTGCGATCCTCTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGACCTCTTTACACCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTGGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATTCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363