Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   LO002_RS16055 Genome accession   NZ_CP087321
Coordinates   3329495..3330010 (+) Length   171 a.a.
NCBI ID   WP_000477147.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC043     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3324495..3335010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO002_RS16035 - 3324814..3326274 (+) 1461 WP_000004971.1 amino acid permease -
  LO002_RS16040 - 3326551..3327756 (+) 1206 WP_000512707.1 RtcB family protein -
  LO002_RS16045 - 3327775..3327918 (+) 144 WP_162138624.1 hypothetical protein -
  LO002_RS16050 omp38 3328043..3329113 (-) 1071 WP_000777882.1 outer membrane protein Omp38 -
  LO002_RS16055 fimT 3329495..3330010 (+) 516 WP_000477147.1 GspH/FimT family pseudopilin Machinery gene
  LO002_RS16060 - 3330119..3331294 (+) 1176 WP_000129968.1 thiolase family protein -
  LO002_RS16065 - 3331421..3331864 (+) 444 WP_001176580.1 VOC family protein -
  LO002_RS16070 - 3331907..3332260 (-) 354 WP_000457787.1 multidrug efflux SMR transporter -
  LO002_RS16075 - 3332343..3332828 (-) 486 WP_000935249.1 DUF934 domain-containing protein -
  LO002_RS16080 - 3332821..3334464 (-) 1644 WP_000281766.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19587.81 Da        Isoelectric Point: 8.4960

>NTDB_id=545124 LO002_RS16055 WP_000477147.1 3329495..3330010(+) (fimT) [Acinetobacter baumannii strain OC043]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=545124 LO002_RS16055 WP_000477147.1 3329495..3330010(+) (fimT) [Acinetobacter baumannii strain OC043]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.373

97.076

0.421