Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JZM60_RS04400 Genome accession   NZ_CP071382
Coordinates   923149..924510 (+) Length   453 a.a.
NCBI ID   WP_207164304.1    Uniprot ID   -
Organism   Geobacter benzoatilyticus strain Jerry-YX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 918149..929510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZM60_RS04380 (JZM60_04380) - 918904..919236 (-) 333 WP_207164300.1 hypothetical protein -
  JZM60_RS04385 (JZM60_04385) - 919372..919956 (+) 585 WP_207164301.1 HEAT repeat domain-containing protein -
  JZM60_RS04390 (JZM60_04390) - 919979..921328 (-) 1350 WP_207164302.1 HD-GYP domain-containing protein -
  JZM60_RS04395 (JZM60_04395) - 921321..922982 (-) 1662 WP_207164303.1 HEAT repeat domain-containing protein -
  JZM60_RS04400 (JZM60_04400) radA 923149..924510 (+) 1362 WP_207164304.1 DNA repair protein RadA Machinery gene
  JZM60_RS04405 (JZM60_04405) dksA 924611..924967 (+) 357 WP_207164305.1 RNA polymerase-binding protein DksA -
  JZM60_RS04410 (JZM60_04410) - 925019..926848 (+) 1830 WP_207164306.1 sensor histidine kinase -
  JZM60_RS04420 (JZM60_04420) - 927275..928249 (-) 975 WP_207164307.1 DUF1848 domain-containing protein -
  JZM60_RS04425 (JZM60_04425) tssJ 928574..929128 (+) 555 WP_207164308.1 type VI secretion system lipoprotein TssJ -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 47704.33 Da        Isoelectric Point: 7.3492

>NTDB_id=545117 JZM60_RS04400 WP_207164304.1 923149..924510(+) (radA) [Geobacter benzoatilyticus strain Jerry-YX]
MTRLKIMTLYVCQNCGYQSPKWLGKCPDCAAWNSLVEEVKSKAKGSSPTHPAGAAPVSISDVAGEAEERLSCGIAEFDRV
LGGGLVTGSVVLIGGDPGIGKSTLLLQVMDHLARSAGPVLYVSGEESARQTRLRGERLGIRAKELLLLAETALETVMAQI
DAVAPRAVVIDSIQTMYAPGLESAPGSVSQVRECAGRLMVAAKRSAIPTFIVGHVTKDGSIAGPRVLEHMVDTVLYFEGD
RGHAFRILRAVKNRFGSTNEIGVFEMKEGGLCEVRNPSEIFLAERPLGVSGSAVITTIEGSRPLLVELQALVTPSSLGVP
RRTTLGVDANRLALLVAVLDKKVGLHMAGQDIFLNAAGGARISEPAADLGMVAALASSHLDKVIDPQTVIIGEVGLAGEV
RAITQPETRVREAAKLGFTRAVIPAGSLKQVTAVKGMEVIGVKSVEEALDRLL

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=545117 JZM60_RS04400 WP_207164304.1 923149..924510(+) (radA) [Geobacter benzoatilyticus strain Jerry-YX]
ATGACCCGCTTGAAAATCATGACGTTGTACGTCTGCCAGAACTGTGGATATCAGTCACCCAAGTGGCTTGGCAAATGCCC
CGACTGTGCCGCATGGAACAGCCTCGTCGAAGAAGTGAAGAGCAAGGCGAAAGGGAGCTCCCCGACTCATCCTGCCGGCG
CAGCGCCGGTCTCCATCAGCGACGTCGCCGGGGAAGCCGAAGAGCGGCTCTCATGCGGCATTGCCGAATTCGACCGGGTA
CTCGGCGGAGGGCTCGTAACCGGTTCCGTCGTCCTCATCGGCGGTGATCCGGGCATCGGCAAATCGACCCTTCTGCTGCA
AGTGATGGACCACTTGGCCCGCTCTGCCGGACCGGTCCTCTACGTCTCCGGCGAAGAGTCCGCGCGCCAGACAAGGCTGC
GCGGAGAACGGTTAGGCATCCGGGCAAAGGAGCTTCTCCTCCTTGCCGAGACAGCTCTCGAAACAGTGATGGCCCAGATC
GACGCCGTGGCTCCCAGGGCCGTGGTCATCGACTCCATCCAGACCATGTACGCACCGGGGCTAGAATCGGCCCCCGGAAG
CGTGAGCCAGGTACGGGAGTGCGCGGGGCGTCTCATGGTGGCCGCCAAGCGCAGCGCCATCCCCACCTTCATCGTGGGGC
ACGTAACCAAGGACGGCTCCATCGCCGGCCCCAGGGTTCTGGAGCACATGGTAGACACGGTCCTCTATTTCGAAGGGGAC
CGGGGACACGCCTTCCGTATCTTGCGCGCGGTCAAGAACCGCTTCGGCTCCACCAACGAGATAGGCGTATTCGAGATGAA
GGAGGGGGGACTTTGTGAGGTCCGCAACCCCTCTGAAATCTTCCTCGCGGAGCGGCCGCTGGGGGTTTCCGGCTCCGCCG
TCATAACCACCATCGAAGGGAGCCGCCCGCTGCTGGTGGAGCTACAGGCCCTCGTCACCCCCTCCTCCCTGGGGGTCCCC
CGCCGCACCACCCTCGGCGTGGATGCCAACCGGCTCGCCTTGCTGGTGGCCGTCCTGGACAAGAAAGTGGGGCTCCACAT
GGCGGGGCAGGACATCTTCCTGAACGCCGCCGGCGGCGCCCGGATAAGCGAGCCGGCCGCCGACCTCGGCATGGTTGCGG
CCCTCGCCTCCAGCCACCTGGACAAGGTCATCGACCCGCAGACGGTCATAATCGGCGAGGTGGGACTGGCCGGCGAAGTA
AGGGCCATAACCCAGCCCGAGACCAGGGTGCGCGAAGCCGCAAAGCTCGGCTTCACACGGGCCGTAATTCCCGCCGGAAG
CCTCAAGCAGGTAACGGCGGTGAAGGGAATGGAAGTGATTGGCGTAAAGTCGGTGGAGGAAGCTCTCGACCGGCTTCTAT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(75-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

57.333

99.338

0.57
  radA Streptococcus pneumoniae Rx1

53.812

98.455

0.53
  radA Streptococcus pneumoniae D39

53.812

98.455

0.53
  radA Streptococcus pneumoniae R6

53.812

98.455

0.53
  radA Streptococcus pneumoniae TIGR4

53.812

98.455

0.53
  radA Streptococcus mitis NCTC 12261

53.587

98.455

0.528
  radA Streptococcus mitis SK321

53.587

98.455

0.528