Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   J0W33_RS13345 Genome accession   NZ_CP071319
Coordinates   2794706..2795410 (-) Length   234 a.a.
NCBI ID   WP_005177031.1    Uniprot ID   A0A6C0Y3U4
Organism   Acinetobacter indicus strain GXNN62X4     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2789706..2800410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0W33_RS13320 (J0W33_13320) - 2789814..2791133 (+) 1320 WP_005177019.1 adenylosuccinate synthase -
  J0W33_RS13325 (J0W33_13325) - 2791270..2792055 (+) 786 WP_104469896.1 M48 family metallopeptidase -
  J0W33_RS13330 (J0W33_13330) - 2792144..2792452 (+) 309 WP_045795068.1 hypothetical protein -
  J0W33_RS13335 (J0W33_13335) - 2792615..2793397 (+) 783 WP_005177027.1 M48 family metallopeptidase -
  J0W33_RS13340 (J0W33_13340) - 2793486..2794535 (-) 1050 WP_168382978.1 NADP(H)-dependent aldo-keto reductase -
  J0W33_RS13345 (J0W33_13345) crp 2794706..2795410 (-) 705 WP_005177031.1 cAMP-activated global transcriptional regulator CRP Regulator
  J0W33_RS13350 (J0W33_13350) - 2795558..2795980 (+) 423 WP_005177032.1 OsmC family protein -
  J0W33_RS13355 (J0W33_13355) clpB 2796305..2798884 (+) 2580 WP_005177034.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26315.89 Da        Isoelectric Point: 4.6470

>NTDB_id=544972 J0W33_RS13345 WP_005177031.1 2794706..2795410(-) (crp) [Acinetobacter indicus strain GXNN62X4]
MTSNFSQLSTDALSPGQLPDSVKALLKRAYINRYPKRTTIVDAGSESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEVTYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNDAADEQFDDE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=544972 J0W33_RS13345 WP_005177031.1 2794706..2795410(-) (crp) [Acinetobacter indicus strain GXNN62X4]
ATGACTTCAAACTTTTCACAATTAAGCACCGATGCCCTGTCTCCTGGTCAATTACCAGATTCAGTCAAGGCATTATTAAA
ACGTGCATATATCAACCGTTATCCGAAACGGACCACAATTGTTGATGCGGGGTCTGAATCAAAATCACTTTATTTGATTC
TGAAAGGATCTGTTTCCATCATTCTGCGTGAAGATGATGATCGCGAAATTGTTGTGGCGTATTTGAATCCGGGTGACTTC
TTTGGGGAAATGGGTCTATTCGAAGCAAATCCACAACGTACTGCAGAAGTACGCACACGTGACGTTTGTGAAATTGCCGA
AGTGACTTATGAAAACTTCCACGAGCTCAGCAAGCAATATCCAGATTTAAGCTATGCGGTATTTGCCCAACTGGTGCGCC
GTTTAAAAAATACCACGCGTAAAGTGACCGATCTGGCCTTCATTGATGTTTCAGGCCGTATTGCGCGTTGTCTGATTGAC
CTGTCTGCGCAGCCTGAAGCCATGATTTTGCCAAATGGCCGTCAAATCCGCATTACCCGTCAGGAAATTGGCCGCATTGT
TGGCTGTTCACGTGAAATGGTCGGCCGTGTTCTGAAAACCCTGGAAGAACAAGGCATGATCGAAACTGATGGTAAAGCCA
TTCTGATTTTTGATGCCTCTTTAGAGCAAAATGATGCAGCAGATGAACAGTTTGATGATGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6C0Y3U4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.026

100

0.91
  crp Vibrio cholerae strain A1552

46.829

87.607

0.41
  crp Haemophilus influenzae Rd KW20

47.179

83.333

0.393