Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   J0W33_RS10380 Genome accession   NZ_CP071319
Coordinates   2175374..2176252 (+) Length   292 a.a.
NCBI ID   WP_005182159.1    Uniprot ID   N9KSY6
Organism   Acinetobacter indicus strain GXNN62X4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2170374..2181252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0W33_RS10355 (J0W33_10355) wrbA 2171189..2171785 (+) 597 WP_104470746.1 NAD(P)H:quinone oxidoreductase -
  J0W33_RS10360 (J0W33_10360) - 2172322..2172702 (-) 381 WP_005182135.1 hypothetical protein -
  J0W33_RS10365 (J0W33_10365) - 2172920..2173495 (-) 576 WP_005182137.1 xanthine phosphoribosyltransferase -
  J0W33_RS10370 (J0W33_10370) - 2173585..2174298 (-) 714 WP_045796415.1 DUF3108 domain-containing protein -
  J0W33_RS10375 (J0W33_10375) - 2174451..2175134 (-) 684 WP_168381751.1 hypothetical protein -
  J0W33_RS10380 (J0W33_10380) tonB2 2175374..2176252 (+) 879 WP_005182159.1 energy transducer TonB Machinery gene
  J0W33_RS10385 (J0W33_10385) - 2176249..2176539 (-) 291 WP_168381752.1 antibiotic biosynthesis monooxygenase family protein -
  J0W33_RS10390 (J0W33_10390) ybeY 2176628..2177110 (-) 483 WP_180104056.1 rRNA maturation RNase YbeY -
  J0W33_RS10395 (J0W33_10395) - 2177130..2178203 (-) 1074 WP_016659561.1 PhoH family protein -
  J0W33_RS10400 (J0W33_10400) miaB 2178245..2179699 (-) 1455 WP_005182171.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33024.72 Da        Isoelectric Point: 9.1867

>NTDB_id=544966 J0W33_RS10380 WP_005182159.1 2175374..2176252(+) (tonB2) [Acinetobacter indicus strain GXNN62X4]
MLKKFHFAPLTQQWWKDPLFGTVLTLAALSHLAVLTVQFVMPQQSDAAVKEIAVSLRPSATEIKDADFLAQADQQGSGTF
REAHRMSSDMPAPMIEQSAGDQQLESLERLQQQRELSFEEKVLMTTLSWQKQAAENQRKKALEELNSQFQAKAAMVASLE
AQYLQRQQNFSRQQKIKTVDGIQAKQDVAAGYLEKFRQKVEFYGNRYYPEAAKQQQLAGEVRLMVILNANGGIRAIRLIE
SSGHAMLDEAAKASVRKAAPFGAFDAKMKDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 879 bp        

>NTDB_id=544966 J0W33_RS10380 WP_005182159.1 2175374..2176252(+) (tonB2) [Acinetobacter indicus strain GXNN62X4]
ATGTTAAAGAAATTTCATTTTGCACCTTTGACGCAGCAGTGGTGGAAAGATCCACTATTTGGCACCGTACTGACGCTGGC
GGCACTTTCGCATCTGGCTGTGTTAACGGTGCAATTTGTCATGCCACAGCAAAGCGATGCCGCGGTCAAGGAAATTGCAG
TCAGCTTAAGACCAAGTGCCACCGAAATTAAGGATGCCGACTTTTTAGCACAGGCCGACCAGCAGGGTTCTGGCACCTTC
CGGGAAGCGCACCGCATGTCCAGCGATATGCCCGCACCAATGATTGAACAGAGTGCCGGTGATCAGCAGCTGGAAAGTCT
TGAGCGTTTGCAGCAGCAGCGTGAACTGAGCTTTGAAGAAAAAGTGCTAATGACCACCTTAAGCTGGCAAAAGCAGGCGG
CGGAAAACCAGCGTAAAAAAGCGCTGGAAGAATTAAACAGCCAGTTTCAGGCCAAAGCGGCGATGGTGGCCAGTCTGGAA
GCGCAGTATTTACAGCGTCAGCAAAATTTCAGCCGTCAGCAGAAAATTAAAACCGTAGATGGAATTCAGGCCAAGCAGGA
TGTCGCAGCCGGTTATCTGGAAAAATTCCGTCAGAAAGTCGAATTTTATGGTAACCGTTATTATCCGGAAGCGGCCAAGC
AGCAACAGTTGGCCGGTGAAGTACGTTTAATGGTGATTTTAAATGCCAACGGCGGGATTCGCGCGATTCGTTTAATTGAA
AGCTCGGGGCATGCCATGCTGGATGAAGCTGCTAAAGCCTCAGTACGAAAAGCTGCTCCTTTTGGTGCCTTTGATGCCAA
GATGAAAGATATTTCCGAGCTACGCATTATCCGGACCTGGCGTTTTGATCCGGCTGAGGCGGAGTTTGAGGTGCGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(205-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KSY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.344

95.548

0.729