Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   J0W33_RS09250 Genome accession   NZ_CP071319
Coordinates   1939916..1940242 (+) Length   108 a.a.
NCBI ID   WP_005181647.1    Uniprot ID   N9MCR8
Organism   Acinetobacter indicus strain GXNN62X4     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1934916..1945242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0W33_RS09225 (J0W33_09225) hemC 1935595..1936512 (+) 918 WP_160243710.1 hydroxymethylbilane synthase -
  J0W33_RS09230 (J0W33_09230) - 1936514..1937293 (+) 780 WP_104484372.1 uroporphyrinogen-III synthase -
  J0W33_RS09235 (J0W33_09235) - 1937290..1938135 (+) 846 WP_206896631.1 hypothetical protein -
  J0W33_RS09240 (J0W33_09240) - 1938138..1939331 (+) 1194 WP_206896632.1 heme biosynthesis protein HemY -
  J0W33_RS09245 (J0W33_09245) - 1939342..1939770 (+) 429 WP_168397799.1 acyl-CoA thioesterase -
  J0W33_RS09250 (J0W33_09250) hns 1939916..1940242 (+) 327 WP_005181647.1 H-NS family nucleoid-associated regulatory protein Regulator
  J0W33_RS09255 (J0W33_09255) gspN 1940406..1941146 (+) 741 WP_104473370.1 type II secretion system protein N -
  J0W33_RS09260 (J0W33_09260) - 1941146..1941982 (+) 837 WP_168369794.1 type II secretion system protein N -
  J0W33_RS09265 (J0W33_09265) gspD 1942023..1944272 (+) 2250 WP_206896633.1 type II secretion system secretin GspD -
  J0W33_RS09270 (J0W33_09270) - 1944339..1945046 (+) 708 WP_168370320.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12240.97 Da        Isoelectric Point: 8.4694

>NTDB_id=544961 J0W33_RS09250 WP_005181647.1 1939916..1940242(+) (hns) [Acinetobacter indicus strain GXNN62X4]
MMPDISNLSVEQLKRLQEEAEALIASKKDQAVEDAYNQILAIAENAGLSIEQILEFGASKRKKNVRKSVEPRYRNKANAN
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=544961 J0W33_RS09250 WP_005181647.1 1939916..1940242(+) (hns) [Acinetobacter indicus strain GXNN62X4]
ATGATGCCCGATATTAGTAATTTGTCTGTAGAACAATTAAAGCGCTTGCAGGAAGAAGCGGAAGCATTAATTGCATCGAA
AAAGGACCAGGCAGTTGAAGATGCATATAATCAGATTTTGGCAATTGCTGAAAATGCGGGTTTAAGCATTGAACAGATTC
TTGAGTTTGGTGCGTCTAAACGTAAAAAGAATGTACGTAAATCGGTAGAGCCGCGTTATCGTAATAAAGCCAATGCCAAT
GAAACCTGGACAGGTCGCGGTAAGCAACCACGCTGGTTAGTGGCGGAACTGGAAAAAGGTGCCAAGCTTGAAGACTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9MCR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852