Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   J0W33_RS00065 Genome accession   NZ_CP071319
Coordinates   9787..10158 (+) Length   123 a.a.
NCBI ID   WP_228288776.1    Uniprot ID   -
Organism   Acinetobacter indicus strain GXNN62X4     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4787..15158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0W33_RS00035 (J0W33_00035) kdsB 5506..6270 (+) 765 WP_168389794.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  J0W33_RS00040 (J0W33_00040) - 6279..7262 (+) 984 WP_075166783.1 DNA polymerase III subunit delta' -
  J0W33_RS00045 (J0W33_00045) - 7274..7615 (+) 342 WP_005177501.1 PilZ domain-containing protein -
  J0W33_RS00050 (J0W33_00050) - 7645..8418 (+) 774 WP_005177502.1 TatD family hydrolase -
  J0W33_RS00055 (J0W33_00055) - 8479..9093 (+) 615 WP_005177503.1 TetR/AcrR family transcriptional regulator -
  J0W33_RS00060 (J0W33_00060) - 9099..9671 (+) 573 WP_180006533.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  J0W33_RS00065 (J0W33_00065) xcpV 9787..10158 (+) 372 WP_228288776.1 type II secretion system minor pseudopilin GspI Machinery gene
  J0W33_RS00070 (J0W33_00070) xcpW 10155..10790 (+) 636 WP_152342358.1 type II secretion system minor pseudopilin GspJ Machinery gene
  J0W33_RS00075 (J0W33_00075) gspK 10836..11783 (+) 948 WP_075174516.1 type II secretion system minor pseudopilin GspK -
  J0W33_RS00080 (J0W33_00080) - 11931..12527 (+) 597 WP_005177512.1 6-pyruvoyl trahydropterin synthase family protein -
  J0W33_RS00085 (J0W33_00085) ung 12569..13282 (+) 714 WP_005177514.1 uracil-DNA glycosylase -
  J0W33_RS00090 (J0W33_00090) - 13279..14403 (+) 1125 WP_206896811.1 enoyl-CoA hydratase/isomerase family protein -
  J0W33_RS00095 (J0W33_00095) tadA 14407..14928 (+) 522 WP_104488986.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13562.51 Da        Isoelectric Point: 5.5255

>NTDB_id=544932 J0W33_RS00065 WP_228288776.1 9787..10158(+) (xcpV) [Acinetobacter indicus strain GXNN62X4]
MAGFTLLEVMVALAIFATAAMALTQVAMQYTQSTSHAILRTKAQFVALNEQALMEIQQDWLTGTQSKQVTLQGESWQIDK
SAQPTISPNVQRVEVQVSLFNPDTGQVEAGITHLVFFNHRVAQ

Nucleotide


Download         Length: 372 bp        

>NTDB_id=544932 J0W33_RS00065 WP_228288776.1 9787..10158(+) (xcpV) [Acinetobacter indicus strain GXNN62X4]
ATTGCCGGTTTTACCTTGCTGGAAGTAATGGTGGCACTGGCGATTTTTGCTACAGCTGCTATGGCGCTGACTCAAGTGGC
CATGCAATATACCCAGTCGACCTCTCATGCCATTTTAAGAACCAAAGCGCAGTTTGTGGCCTTAAACGAACAGGCTCTAA
TGGAAATCCAGCAGGACTGGCTGACGGGTACGCAATCAAAACAGGTCACCCTGCAAGGTGAAAGCTGGCAAATTGATAAA
AGCGCACAGCCGACCATTAGCCCGAATGTGCAGCGGGTAGAAGTGCAGGTCAGCTTATTTAACCCCGATACCGGTCAGGT
TGAAGCCGGCATCACCCATTTGGTGTTTTTTAATCATCGGGTGGCGCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(40-98)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

78.151

96.748

0.756