Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   J0W32_RS10480 Genome accession   NZ_CP071317
Coordinates   2220906..2221784 (+) Length   292 a.a.
NCBI ID   WP_180006786.1    Uniprot ID   -
Organism   Acinetobacter indicus strain GXNN15X4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2215906..2226784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0W32_RS10450 (J0W32_10450) wrbA 2216694..2217290 (+) 597 WP_016659569.1 NAD(P)H:quinone oxidoreductase -
  J0W32_RS10455 (J0W32_10455) - 2217578..2217769 (+) 192 WP_016659568.1 hypothetical protein -
  J0W32_RS10460 (J0W32_10460) - 2217838..2218233 (-) 396 WP_016659567.1 hypothetical protein -
  J0W32_RS10465 (J0W32_10465) - 2218451..2219026 (-) 576 WP_005182137.1 xanthine phosphoribosyltransferase -
  J0W32_RS10470 (J0W32_10470) - 2219116..2219829 (-) 714 WP_005182145.1 DUF3108 domain-containing protein -
  J0W32_RS10475 (J0W32_10475) - 2219983..2220666 (-) 684 WP_016659565.1 hypothetical protein -
  J0W32_RS10480 (J0W32_10480) tonB2 2220906..2221784 (+) 879 WP_180006786.1 energy transducer TonB Machinery gene
  J0W32_RS10485 (J0W32_10485) - 2221781..2222071 (-) 291 WP_163169943.1 antibiotic biosynthesis monooxygenase family protein -
  J0W32_RS10490 (J0W32_10490) ybeY 2222160..2222642 (-) 483 WP_005182166.1 rRNA maturation RNase YbeY -
  J0W32_RS10495 (J0W32_10495) - 2222662..2223735 (-) 1074 WP_016659561.1 PhoH family protein -
  J0W32_RS10500 (J0W32_10500) miaB 2223777..2225231 (-) 1455 WP_005182171.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33098.80 Da        Isoelectric Point: 9.1971

>NTDB_id=544925 J0W32_RS10480 WP_180006786.1 2220906..2221784(+) (tonB2) [Acinetobacter indicus strain GXNN15X4]
MLKKFHFAPLTQQWWKDPLFGTVLTLAALSHLAVLTVQFVMPQQSDAAVKEIAVSLRPSATEIKDADFLAQADQQGSGTF
REAHRMSSDMLAPMIEQSAGDQQLESLERLQQQRELSFEEKVLMTTLSWQKQAAENQRKKALEELNSQFQAKAAMVASLE
AQYLQRQQNFSRQQKIKTVDGIQAKQDVAAGYLERFRQKVEFYGNRYYPEAAKQQQLAGEVRLMVILNANGGIRAIRLIE
SSGHTMLDEAAKASVRKAAPFGAFDAKMKDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 879 bp        

>NTDB_id=544925 J0W32_RS10480 WP_180006786.1 2220906..2221784(+) (tonB2) [Acinetobacter indicus strain GXNN15X4]
ATGTTAAAGAAATTTCATTTTGCACCTTTGACGCAGCAGTGGTGGAAAGATCCACTATTTGGCACCGTACTGACGCTGGC
GGCACTTTCGCATCTGGCTGTGTTAACGGTGCAATTTGTCATGCCACAGCAAAGCGATGCCGCGGTCAAGGAAATTGCAG
TCAGCTTAAGACCAAGTGCCACCGAAATTAAGGATGCCGACTTTTTAGCACAGGCCGACCAGCAGGGTTCTGGCACCTTC
CGGGAAGCGCACCGCATGTCCAGCGATATGCTCGCACCAATGATTGAACAGAGTGCCGGTGATCAGCAGCTGGAAAGTCT
GGAGCGTTTGCAGCAGCAGCGTGAACTGAGCTTTGAAGAAAAAGTGCTAATGACCACCTTAAGCTGGCAAAAGCAGGCGG
CGGAAAACCAGCGTAAAAAAGCGCTGGAAGAATTAAACAGCCAGTTTCAGGCCAAAGCGGCGATGGTGGCCAGTCTGGAA
GCGCAGTATTTACAGCGTCAGCAAAATTTCAGCCGTCAGCAGAAAATTAAAACCGTAGATGGAATTCAGGCCAAGCAGGA
TGTCGCAGCCGGTTATCTGGAAAGATTCCGTCAGAAAGTCGAATTTTATGGTAACCGTTATTATCCGGAAGCGGCCAAGC
AGCAACAGTTGGCCGGTGAGGTGCGTTTAATGGTGATTTTAAATGCCAACGGTGGGATTCGTGCGATTCGTTTAATTGAA
AGCTCGGGGCATACCATGCTGGATGAAGCTGCCAAGGCTTCTGTGCGTAAAGCTGCTCCTTTTGGTGCCTTTGATGCCAA
GATGAAAGATATTTCCGAGCTACGCATTATCCGGACCTGGCGTTTTGACCCGGCTGAGGCGGAGTTTGAGGTGCGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(205-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

75.627

95.548

0.723