Detailed information NTG0544880

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: JZY07_RS10685
• Genome accession: NZ_CP071305
• Coordinates: 2166128..2167495 (-)
• Length: 455 a.a.
• NCBI ID: WP_024404944.1
• Uniprot ID: A0A4T2GZR1
• Organism: Streptococcus suis strain SC183
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	2156865..2167945	2166128..2167495	within	0

Gene organization within MGE regions

Location: 2156865..2167945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JZY07_RS10655 (JZY07_10655)	-	2156865..2157524 (-)	660	WP_024411704.1	hypothetical protein	-
JZY07_RS10660 (JZY07_10660)	-	2157529..2157975 (-)	447	WP_024407334.1	LytTR family DNA-binding domain-containing protein	-
JZY07_RS11770	-	2158115..2158306 (-)	192	WP_024411703.1	LPXTG cell wall anchor domain-containing protein	-
JZY07_RS10670 (JZY07_10670)	-	2159063..2164255 (-)	5193	Protein_2084	KxYKxGKxW signal peptide domain-containing protein	-
JZY07_RS10675 (JZY07_10675)	-	2164528..2165286 (-)	759	WP_013730631.1	TIGR00266 family protein	-
JZY07_RS10680 (JZY07_10680)	-	2165510..2166004 (-)	495	WP_014638738.1	carbonic anhydrase	-
JZY07_RS10685 (JZY07_10685)	radA	2166128..2167495 (-)	1368	WP_024404944.1	DNA repair protein RadA	Machinery gene
JZY07_RS10690 (JZY07_10690)	-	2167502..2167945 (-)	444	WP_024388517.1	dUTP diphosphatase	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49871.38 Da
• Isoelectric Point: 6.1911

>NTDB_id=544880 JZY07_RS10685 WP_024404944.1 2166128..2167495(-) (radA) [Streptococcus suis strain SC183]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide

• Length: 1368 bp

>NTDB_id=544880 JZY07_RS10685 WP_024404944.1 2166128..2167495(-) (radA) [Streptococcus suis strain SC183]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCACCCAAGTATCTGGGCCGCTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAGCTCAATGAAGTTTCCTCCATTCAAGTGGCTCGTACTAAGACCAACATGGAAGAGTTCAAC
CGCGTCCTCGGAGGCGGCGTGGTACCGGGAAGTCTGGTCCTGATTGGAGGCGATCCAGGAATCGGGAAATCCACCCTGCT
TTTACAGGTATCGACCCAACTTTCGACCATTGGTACCGTCCTCTATGTGTCGGGGGAAGAATCTGCCCAGCAGATTAAGT
TGCGGGCGGAGCGTTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATAAAACCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGCCCTGACATTTCTAGCGTACAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAGATTGCCAAGACCAACAACATCGCAACATTCATCGTCG
GCCACATGACCAAGGAAGGCACCCTGGCTGGACCGCGGACCTTGGAGCACATGGTGGACACCGTTCTCTATTTTGAGGGC
GAGCGACAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGCTTAGTCGAAGTCCTCAATCCTAGTGAAGTCTTTCTGGAGGAGCGTTTGGACGGGGCGACTGGCTCTG
CGATTGTCGTGACCATGGAGGGCACCCGCCCGATCCTTGCAGAAGTGCAGGCCTTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAATCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTTGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGATAAGCCGACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGTGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCTAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCCCTGACAGGTATCAAGGTACCCAAGGAAATCACCGTTATCGGCGTGACAACCATTGGCGAAGTCTTGCAGAAAGTGT
TCAACTGA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-37)

• AAA domain (AAA_25) (64-220)

• Subunit ChlI of Mg-chelatase (ChlI) (363-427)

3D structure

• AlphaFold DB: A0A4T2GZR1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus mitis NCTC 12261	91.372	99.341	0.908
radA	Streptococcus pneumoniae Rx1	91.15	99.341	0.905
radA	Streptococcus pneumoniae D39	91.15	99.341	0.905
radA	Streptococcus pneumoniae R6	91.15	99.341	0.905
radA	Streptococcus pneumoniae TIGR4	91.15	99.341	0.905
radA	Streptococcus mitis SK321	90.929	99.341	0.903
radA	Bacillus subtilis subsp. subtilis str. 168	62.693	99.56	0.624