Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   JZY07_RS08995 Genome accession   NZ_CP071305
Coordinates   1809976..1811751 (-) Length   591 a.a.
NCBI ID   WP_024412176.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1804976..1816751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS08970 (JZY07_08970) - 1805048..1805470 (+) 423 WP_024399646.1 membrane protein -
  JZY07_RS08975 (JZY07_08975) - 1805460..1807259 (+) 1800 WP_024393850.1 acyltransferase family protein -
  JZY07_RS08980 (JZY07_08980) - 1807483..1808136 (-) 654 WP_024382396.1 phosphatase PAP2 family protein -
  JZY07_RS08985 (JZY07_08985) - 1808161..1808718 (-) 558 WP_024399645.1 ECF transporter S component -
  JZY07_RS08990 (JZY07_08990) - 1809041..1809586 (-) 546 WP_014736238.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  JZY07_RS08995 (JZY07_08995) oppA 1809976..1811751 (-) 1776 WP_024412176.1 oligopeptide ABC transporter substrate-binding protein Regulator
  JZY07_RS09000 (JZY07_09000) yidD 1812246..1812484 (-) 239 Protein_1749 membrane protein insertion efficiency factor YidD -
  JZY07_RS09005 (JZY07_09005) - 1812484..1813215 (-) 732 WP_024412178.1 pseudouridine synthase -
  JZY07_RS09010 (JZY07_09010) scpB 1813202..1813774 (-) 573 WP_024412179.1 SMC-Scp complex subunit ScpB -
  JZY07_RS09015 (JZY07_09015) - 1813758..1814477 (-) 720 WP_024412180.1 segregation/condensation protein A -
  JZY07_RS09020 (JZY07_09020) xerD 1814477..1815208 (-) 732 WP_024412181.1 site-specific tyrosine recombinase XerD -
  JZY07_RS09025 (JZY07_09025) cbpB 1815205..1815663 (-) 459 WP_024412182.1 cyclic-di-AMP-binding protein CbpB -
  JZY07_RS09030 (JZY07_09030) - 1815660..1816187 (-) 528 WP_024399641.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65471.20 Da        Isoelectric Point: 4.3011

>NTDB_id=544872 JZY07_RS08995 WP_024412176.1 1809976..1811751(-) (oppA) [Streptococcus suis strain SC183]
MKRMKNIALTGIGLLSIATLTACQTKEKTSDVALTFKSEVTHEGQTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFA
DMVDISMFGYDSARKLDDSGLAKAEFDVDAKTVTVSLTGKDYKWSDGQAFTIDDYIFTIEQLASPDYTGVRADTTYTNII
GFEEFQAGTASEISGVKKVDDYTVVLSVKDMSPSMMYAGGGVPYLVMPKHIFKDIAVKDWESSEYSRTAKVVGMGPYKVK
EIVNGESVTYVPNEYYFKGKVKLDSYRIDIVSPDTIVAEMRAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFN
LGKYDDASGKNVTNPNAKMNSVKLRQAMGYALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSELAGYSYDPEKAKKLLD
EAGYKDVDGDGMREDADGKPLTISVAAQKSTETQETMVQQYLTWWKEIGLNVELYTGRTIEYNTFYESIAANDEGIDVYL
AAWIAGLDPDPTSLWGPEAMYNYTRFVSDENTALLNKITSAESFNEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNK
RVKYYDVYIGSDSKSGHENFELTAEKGIAAE

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=544872 JZY07_RS08995 WP_024412176.1 1809976..1811751(-) (oppA) [Streptococcus suis strain SC183]
ATGAAAAGAATGAAAAACATCGCTTTAACTGGTATCGGTCTGCTTTCTATTGCAACGTTAACAGCTTGTCAAACTAAAGA
AAAGACGAGCGATGTTGCTCTGACATTTAAATCAGAAGTGACACACGAAGGACAAACTATTGAAGGCGGAAGTCTCAAAT
ATGCTTTGGTAGCTTCGGCGCCTTCGACCGGTATCTTAATTGATGAATTATCGCAAACGGCGGTAGACTCAACCTTTGCA
GACATGGTTGATATTTCTATGTTTGGATATGATTCAGCTCGTAAGTTAGACGATTCAGGCCTTGCTAAGGCAGAGTTTGA
TGTAGACGCAAAGACAGTTACCGTTAGTTTGACAGGCAAGGACTATAAGTGGTCCGATGGGCAAGCCTTCACCATTGATG
ATTATATTTTCACAATCGAACAACTAGCTAGTCCAGACTATACAGGGGTTCGTGCAGATACTACCTATACAAATATCATT
GGCTTTGAAGAATTTCAGGCTGGAACAGCAAGTGAAATTTCAGGTGTTAAGAAGGTTGATGACTATACGGTAGTCCTCTC
AGTGAAAGACATGTCTCCATCCATGATGTATGCTGGTGGTGGAGTACCTTATTTAGTCATGCCGAAACACATTTTTAAAG
ACATTGCAGTCAAAGATTGGGAGTCAAGTGAGTATTCTCGTACGGCAAAAGTTGTCGGTATGGGCCCTTATAAGGTCAAG
GAAATTGTCAATGGCGAGTCGGTGACCTATGTACCAAATGAGTACTACTTTAAAGGGAAAGTTAAGCTAGATAGTTACAG
GATTGATATTGTTTCACCAGATACGATTGTTGCAGAAATGAGAGCAGGCAATTATGATATTGCTGATATGCCAACAGACC
AGTACGAATCTTACAAGGACTTATCTAATATTACTTTACTAGGTAGTCTGGATGGTATTTACAATTATATTGGCTTTAAT
CTTGGTAAGTACGATGATGCTAGTGGTAAGAATGTGACCAATCCTAATGCTAAGATGAATAGTGTTAAATTGCGTCAAGC
AATGGGATATGCATTGGACAATGCGGTGATTGGAGAGAAATTATATAACGGCTTGTATCACCCGACAAACTCACTAATTA
TCTCTTTCTTTGGAGATGTTCATGATTCAGAATTAGCTGGCTATAGTTATGATCCTGAAAAGGCTAAAAAACTTCTCGAT
GAGGCAGGATATAAAGACGTAGATGGAGACGGTATGCGTGAAGATGCTGATGGAAAACCGCTTACCATCAGTGTTGCAGC
ACAGAAATCAACCGAAACGCAAGAAACCATGGTACAGCAATACCTTACATGGTGGAAAGAAATTGGTTTGAATGTGGAAC
TCTATACAGGAAGAACTATTGAGTACAATACTTTCTATGAATCAATTGCTGCCAATGATGAGGGGATTGATGTCTATCTT
GCTGCTTGGATTGCCGGCCTAGATCCAGACCCGACATCATTGTGGGGACCTGAAGCGATGTACAACTATACTCGCTTCGT
TTCAGATGAAAACACAGCACTTTTAAATAAAATTACCTCTGCTGAGTCATTTAACGAACAGAAAAATATTGAAAACTACA
AAGCTTGGCAAGAATATGCCTTCGAACAAGCCTTTGCAATTCCAACCTTTGAACGTGAAAGTATTACTGCCGTTAACAAA
CGCGTTAAATATTATGACGTTTATATCGGTTCGGACAGTAAATCAGGACATGAAAATTTTGAGTTGACTGCGGAAAAAGG
GATTGCAGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(100-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

65.488

100

0.658