Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   JZY07_RS01185 Genome accession   NZ_CP071305
Coordinates   212456..213169 (+) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A142UPI2
Organism   Streptococcus suis strain SC183     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 208534..226301 212456..213169 within 0


Gene organization within MGE regions


Location: 208534..226301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS01175 (JZY07_01175) treC 208534..210159 (-) 1626 WP_024411912.1 alpha,alpha-phosphotrehalase -
  JZY07_RS01180 (JZY07_01180) treP 210241..212223 (-) 1983 WP_024400391.1 PTS system trehalose-specific EIIBC component -
  JZY07_RS01185 (JZY07_01185) treR 212456..213169 (+) 714 WP_012774930.1 trehalose operon repressor Regulator
  JZY07_RS01190 (JZY07_01190) - 213227..213538 (+) 312 WP_002935948.1 hypothetical protein -
  JZY07_RS01195 (JZY07_01195) - 213535..214083 (+) 549 WP_024400390.1 CvpA family protein -
  JZY07_RS01200 (JZY07_01200) - 214574..216907 (+) 2334 WP_206974771.1 endonuclease MutS2 -
  JZY07_RS01205 (JZY07_01205) - 217073..217465 (+) 393 WP_024400388.1 DUF1310 family protein -
  JZY07_RS01210 (JZY07_01210) - 217458..217721 (+) 264 WP_024400387.1 hypothetical protein -
  JZY07_RS01215 (JZY07_01215) - 217747..218136 (+) 390 WP_002935938.1 DUF1310 family protein -
  JZY07_RS01220 (JZY07_01220) - 218129..219388 (+) 1260 WP_024411914.1 Mbeg1-like protein -
  JZY07_RS01225 (JZY07_01225) - 219367..219753 (+) 387 WP_024400383.1 hypothetical protein -
  JZY07_RS01230 (JZY07_01230) - 219766..220086 (+) 321 WP_002935924.1 hypothetical protein -
  JZY07_RS01235 (JZY07_01235) trxA 220643..220957 (+) 315 WP_015646361.1 thioredoxin -
  JZY07_RS01240 (JZY07_01240) - 221094..222623 (+) 1530 WP_024411915.1 AMP-binding protein -
  JZY07_RS01245 (JZY07_01245) msrB 222663..223604 (+) 942 WP_024411916.1 peptide-methionine (R)-S-oxide reductase MsrB -
  JZY07_RS01250 (JZY07_01250) - 223793..224137 (+) 345 WP_172039846.1 hypothetical protein -
  JZY07_RS01255 (JZY07_01255) - 224127..224363 (+) 237 WP_024411918.1 hypothetical protein -
  JZY07_RS01260 (JZY07_01260) - 224441..224851 (+) 411 WP_024411919.1 hypothetical protein -
  JZY07_RS01265 (JZY07_01265) - 224851..225087 (+) 237 WP_024411920.1 hypothetical protein -
  JZY07_RS01270 (JZY07_01270) - 225166..225576 (+) 411 WP_024411921.1 hypothetical protein -
  JZY07_RS01275 (JZY07_01275) - 225576..225812 (+) 237 WP_024411922.1 hypothetical protein -
  JZY07_RS01280 (JZY07_01280) - 225891..226301 (+) 411 WP_024383130.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=544845 JZY07_RS01185 WP_012774930.1 212456..213169(+) (treR) [Streptococcus suis strain SC183]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=544845 JZY07_RS01185 WP_012774930.1 212456..213169(+) (treR) [Streptococcus suis strain SC183]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAT
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTACGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142UPI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515