Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J0J35_RS09535 Genome accession   NZ_CP071301
Coordinates   1915689..1917050 (+) Length   453 a.a.
NCBI ID   WP_029345652.1    Uniprot ID   A0A252CD69
Organism   Lactococcus sp. LG606     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1910689..1922050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J35_RS09500 (J0J35_09500) rpsM 1910692..1911057 (+) 366 WP_003133773.1 30S ribosomal protein S13 -
  J0J35_RS09505 (J0J35_09505) rpsK 1911075..1911458 (+) 384 WP_003133774.1 30S ribosomal protein S11 -
  J0J35_RS09510 (J0J35_09510) - 1911510..1912448 (+) 939 WP_003133775.1 DNA-directed RNA polymerase subunit alpha -
  J0J35_RS09515 (J0J35_09515) rplQ 1912464..1912844 (+) 381 WP_003133776.1 50S ribosomal protein L17 -
  J0J35_RS09520 (J0J35_09520) - 1913234..1914718 (+) 1485 WP_206916764.1 S-layer homology domain-containing protein -
  J0J35_RS09525 (J0J35_09525) - 1914728..1915180 (+) 453 WP_019292998.1 hypothetical protein -
  J0J35_RS09535 (J0J35_09535) radA 1915689..1917050 (+) 1362 WP_029345652.1 DNA repair protein RadA Machinery gene
  J0J35_RS09540 (J0J35_09540) - 1917182..1918258 (+) 1077 WP_019291422.1 PIN/TRAM domain-containing protein -
  J0J35_RS09545 (J0J35_09545) - 1918281..1918910 (+) 630 WP_206916767.1 pyridoxamine 5'-phosphate oxidase family protein -
  J0J35_RS09550 (J0J35_09550) ald 1919097..1920218 (+) 1122 WP_019291420.1 alanine dehydrogenase -
  J0J35_RS09555 (J0J35_09555) - 1920249..1920743 (-) 495 WP_019291419.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49754.94 Da        Isoelectric Point: 4.9237

>NTDB_id=544817 J0J35_RS09535 WP_029345652.1 1915689..1917050(+) (radA) [Lactococcus sp. LG606]
MAKKKSTFLCQECGYKSVKKLGRCPNCGAWGSFVEEVEVQEVKNQRVSLTGEHSKPMKLDQVELFDTPRVETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDTDFYLYAETNMQSIRNEVE
RLQPDFLIVDSIQTIMTPEIQSTQGSVSQVREVTGELMQLAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
QNTFRILRAVKNRFGSTNEIGIFEMQGSGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRAGFLLQQQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEEPTDARECFIGEIGLTGEIR
RVTRMEQRLNEASKLGFQKVYAPKNSLAGVDIPENLQVIGVTTLSECLKKVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=544817 J0J35_RS09535 WP_029345652.1 1915689..1917050(+) (radA) [Lactococcus sp. LG606]
ATAGCTAAAAAAAAATCAACCTTTCTTTGTCAAGAATGTGGCTATAAATCAGTAAAAAAACTCGGACGTTGTCCCAATTG
TGGCGCTTGGGGCTCCTTTGTGGAAGAAGTAGAAGTCCAAGAGGTAAAAAATCAGAGAGTAAGTTTGACAGGTGAGCACT
CTAAACCCATGAAGTTAGATCAGGTTGAACTTTTTGATACACCGCGCGTGGAAACCGATCTAGATGAGTTTAACCGAGTC
CTTGGAGGCGGTGTCGTTCCAGGAAGTCTTGTCCTTATTGGGGGTGATCCAGGGATTGGTAAATCGACTCTACTGCTTCA
AGTATCTACACAACTTGCTTCAAGAGGGCGTGTCCTTTATGTGAGTGGGGAGGAGTCAGCTCAACAAATTAAGCTACGTG
CTGAGCGTTTGGGCGACATTGATACAGATTTTTATCTTTATGCTGAAACCAATATGCAAAGTATCCGAAATGAAGTGGAA
CGTCTACAGCCAGATTTTCTTATTGTAGATTCGATTCAAACTATCATGACGCCTGAAATTCAGAGTACCCAGGGTTCAGT
TAGTCAAGTGCGTGAGGTGACAGGAGAATTAATGCAATTGGCCAAAACTAACGATATTGCGACTTTTATTGTCGGACATG
TCACCAAGGAAGGGCAACTTGCAGGCCCACGTATGTTGGAACATATGGTTGATACCGTCTTGTATTTTGAAGGAGAACGC
CAAAATACATTCCGAATTTTACGCGCGGTCAAAAACCGTTTTGGTTCAACAAATGAAATTGGAATTTTCGAAATGCAAGG
CAGTGGTTTAGTGGAAGTAACCAACCCGAGTGAAGTCTTTCTGGAAGAACGTCTAGAGGGTTCTACCGGATCTGCTATCG
TCTGTGCGTTAGAAGGTACTCGTCCGATATTGGTTGAAATTCAAGCTTTGACAACACCAACCATGTTTGGGAATGCCAAA
CGTACAACCTCCGGTTTAGACTTTAACCGTGTGAGTTTAATCATGGCAGTACTTGAAAAGCGTGCCGGTTTTCTTTTACA
ACAGCAAGATGCTTACTTGAAATCTGCAGGTGGGGTCAAGTTGGATGAACCAGCCATCGACTTGGCAGTCGCTGTGGCAA
TTGCTTCCAGCTATAAGGAAGAGCCAACAGATGCACGTGAATGCTTTATTGGCGAAATTGGCCTAACTGGAGAAATCCGA
CGTGTCACACGTATGGAGCAACGTCTCAATGAAGCAAGTAAATTAGGTTTCCAAAAAGTATATGCGCCTAAGAATAGCTT
AGCAGGTGTAGATATTCCAGAAAATTTGCAAGTGATCGGCGTGACGACTTTATCTGAATGTTTGAAAAAAGTGTTTGGCT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(359-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A252CD69

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

80.795

100

0.808
  radA Streptococcus pneumoniae D39

80.795

100

0.808
  radA Streptococcus pneumoniae R6

80.795

100

0.808
  radA Streptococcus pneumoniae TIGR4

80.795

100

0.808
  radA Streptococcus mitis NCTC 12261

80.795

100

0.808
  radA Streptococcus mitis SK321

80.795

100

0.808
  radA Bacillus subtilis subsp. subtilis str. 168

61.438

100

0.623