Detailed information NTG0544799

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: J0J35_RS06685
• Genome accession: NZ_CP071301
• Coordinates: 1350474..1352720 (-)
• Length: 748 a.a.
• NCBI ID: WP_206916275.1
• Uniprot ID: -
• Organism: Lactococcus sp. LG606
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1345474..1357720

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J0J35_RS06655 (J0J35_06655)	fabZ	1345803..1346261 (+)	459	WP_003134189.1	3-hydroxyacyl-ACP dehydratase FabZ	-
J0J35_RS06660 (J0J35_06660)	uvrB	1346288..1348276 (-)	1989	WP_061414792.1	excinuclease ABC subunit UvrB	-
J0J35_RS06665 (J0J35_06665)	-	1348273..1348728 (-)	456	WP_017370530.1	RNA pyrophosphohydrolase	-
J0J35_RS06670 (J0J35_06670)	def	1348833..1349459 (+)	627	WP_017370260.1	peptide deformylase	-
J0J35_RS06675 (J0J35_06675)	-	1349504..1349749 (-)	246	WP_019292955.1	hypothetical protein	-
J0J35_RS06680 (J0J35_06680)	yqeK	1349832..1350419 (-)	588	WP_206916273.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	-
J0J35_RS06685 (J0J35_06685)	clpC	1350474..1352720 (-)	2247	WP_206916275.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
J0J35_RS06690 (J0J35_06690)	rpoD	1352938..1354320 (-)	1383	WP_017370526.1	RNA polymerase sigma factor RpoD	-
J0J35_RS06695 (J0J35_06695)	dnaG	1354356..1356242 (-)	1887	WP_206916277.1	DNA primase	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 83324.27 Da
• Isoelectric Point: 4.7430

>NTDB_id=544799 J0J35_RS06685 WP_206916275.1 1350474..1352720(-) (clpC) [Lactococcus sp. LG606]
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGSQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIHKRDDVILFIDEIHEIVGAGSAGEGNMDAGN
ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEAQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNAQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVKGTADTSDTEDEEK

Nucleotide

• Length: 2247 bp

>NTDB_id=544799 J0J35_RS06685 WP_206916275.1 1350474..1352720(-) (clpC) [Lactococcus sp. LG606]
ATGCTCTGCCAAAATTGTAAAATAAACGAAGCGACAATTCACCTTTATACAAATGTGAATGGCCAGCGTAAGCAAGTGGA
TTTATGCCAAAACTGTTATCAAATTATGAAATCAGGTGGTCAAGAAAGCTTGTTTGCTGGAGCTACAAATATTTCGAATA
ATGATGATCCTTTTAATCCATTTCCAGATATTTTCCAAGCCTTACATGGTAATGATCAAGGTCGGACAATGACACCTCCA
ACACAAGCGGGTGGTCGAGGCCCAGGAGGTCCACAAAATCCTCGTGGAAGTCAAGCACCTAAAGGACTTCTTGAAGAATT
CGGAGTCAACATTACTGATGCTGCACGTCGTGGAGAAATAGATCCTGTTATTGGACGGGATTCTGAAATTACACGTGTTA
TCGAAATTTTGAATCGTCGAACAAAAAATAATCCTGTTCTTATCGGTGAACCTGGTGTTGGGAAAACAGCAGTTGTTGAA
GGTTTAGCCCAAAAAATAGTTGATGGTGATGTACCACAAAAACTACAAAATAAAGAAGTTATTCGTCTTGATGTTGTCAG
TCTCGTCCAAGGTACTGGTGTGCGTGGGCAATTTGAAGAGCGTATGCAAAAACTGATGGAAGAGATTCATAAACGTGATG
ACGTTATCCTCTTCATTGATGAAATTCATGAGATTGTGGGCGCAGGCTCTGCTGGGGAAGGAAATATGGATGCTGGAAAT
ATCCTTAAACCGGCTTTAGCACGTGGAGAACTCCAACTTGTTGGAGCAACAACCCTCAATGAATATCGAATTATTGAAAA
AGATGCAGCGCTTGAGCGTCGGATGCAACCTGTTAAAGTTGATGAACCTTCTGTAGATGAGACTATCACAATCTTACGTG
GTATTCAAAAACGTTATGAAGATTATCATCATGTAAAATACTCAGATGAAGCAATCCTAGCTGCTGCAAATCTGTCTAAC
CGTTATATTCAGGACCGTTTCCTTCCCGATAAAGCAATAGACTTGCTGGACGAAGCGGGTTCGAAAAAGAATCTGACCCT
CAAATTTGTTGATCCTGAGGACATAAAGAAACGTATTGAGCAAGCAGAGGCGCAAAAAAACGAAGCCATGCAACGTGAAG
ATTTTGAGAAAGCAGCTCATTTCCGTGATCAAATCGCTAAGCTTCGTGAGCTTCAAAGCCATGAAATCTCAGATACTGAC
ATGCCAAATATCACAGAAAAAGATATTGAAGCAATTGTTGAAGAAAAGACACATATACCTGTAGGTGATTTGAAAGAAAA
AGAACAAACACAGCTCATTAATCTAGCTGAAGACTTGAAAGAACATGTTATCGGGCAAGATGAAGCGATTGATAAAATTT
CTAAAGCTGTGCGTCGTTCGCGTGTCGGACTTGGAAAGCCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCTACT
GGTGTAGGGAAGACCGAACTTGCAAAACAATTGGCTTATGAGCTTTTTGGCTCAAGAGATAGCATGATTCGCTTTGACAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGTGCTCCTCCAGGATATGTGGGGTATGAAGAAGCAGGTC
AGTTGACAGAACGTGTGCGCCGTAACCCATACAGCTTAATTTTATTGGATGAGATTGAGAAAGCTCACCCGGATGTAATG
CATATGTTCTTGCAAATTCTTGATGACGGGCGTTTGACAGATGCGCAAGGTCGTACAGTTTCCTTCAAAGATGCCATCAT
CATTATGACATCGAATGCTGGTACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGCGCTGCACGTGAAGGACGTACGAATT
CAGTGCTTGGAGAGTTGGGTAATTTCTTCAGTCCAGAATTCATGAACCGTTTTGATGCTATCATTGAATTCTCAGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTAGATTTAATGTTGGATGAAGTAAATGCTCAAATCGCTCAAAATGATATTCATCT
TGACGTCACACAGGCGGTTAAAGAAAAACTCGTTGATCTGGGCTACGATCCGAAAATGGGAGCACGCCCATTACGTCGTA
CCATCCAGGATAATATCGAGGATGCTATTGCTGATTTTTATATCGAGCATCCTGAGTATAAAGAATTACTTGCAGATTTG
GTTGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAAAAGGCACAGCGGATACATCTGATACTGAAGATGAGGA
GAAATAA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (284-383)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (640-710)

• ATPase family associated with various cellular activities (AAA) (AAA) (146-259)

• AAA domain (Cdc48 subfamily) (AAA_2) (469-634)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	86.364	100	0.864
clpE	Streptococcus mutans UA159	77.483	100	0.782
clpE	Streptococcus pneumoniae TIGR4	77.565	97.727	0.758
clpE	Streptococcus pneumoniae Rx1	77.565	97.727	0.758
clpE	Streptococcus pneumoniae D39	77.565	97.727	0.758
clpE	Streptococcus pneumoniae R6	77.565	97.727	0.758
clpC	Bacillus subtilis subsp. subtilis str. 168	51.944	85.963	0.447
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.798	81.952	0.392
clpC	Streptococcus pneumoniae Rx1	46.935	82.888	0.389
clpC	Streptococcus pneumoniae D39	46.935	82.888	0.389
clpC	Streptococcus pneumoniae TIGR4	46.774	82.888	0.388
clpC	Streptococcus mutans UA159	46.602	82.62	0.385
clpC	Streptococcus thermophilus LMD-9	45.645	82.888	0.378
clpC	Streptococcus thermophilus LMG 18311	45.484	82.888	0.377