Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   LO014_RS15325 Genome accession   NZ_CP087300
Coordinates   3071391..3071906 (+) Length   171 a.a.
NCBI ID   WP_000477150.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC061     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3066391..3076906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO014_RS15305 - 3066710..3068170 (+) 1461 WP_000004972.1 amino acid permease -
  LO014_RS15310 - 3068447..3069652 (+) 1206 WP_000512703.1 RtcB family protein -
  LO014_RS15315 - 3069656..3069814 (+) 159 WP_000692859.1 hypothetical protein -
  LO014_RS15320 omp38 3069939..3071009 (-) 1071 WP_000777882.1 outer membrane protein Omp38 -
  LO014_RS15325 fimT 3071391..3071906 (+) 516 WP_000477150.1 GspH/FimT family pseudopilin Machinery gene
  LO014_RS15330 - 3072015..3073190 (+) 1176 WP_000129973.1 thiolase family protein -
  LO014_RS15335 - 3073317..3073757 (+) 441 Protein_2999 VOC family protein -
  LO014_RS15340 - 3073803..3074156 (-) 354 WP_000457784.1 multidrug efflux SMR transporter -
  LO014_RS15345 - 3074238..3074723 (-) 486 WP_000935245.1 DUF934 domain-containing protein -
  LO014_RS15350 - 3074716..3076359 (-) 1644 WP_000281768.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19640.87 Da        Isoelectric Point: 8.8196

>NTDB_id=544734 LO014_RS15325 WP_000477150.1 3071391..3071906(+) (fimT) [Acinetobacter baumannii strain OC061]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQFKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=544734 LO014_RS15325 WP_000477150.1 3071391..3071906(+) (fimT) [Acinetobacter baumannii strain OC061]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGTTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427