Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LO014_RS08545 Genome accession   NZ_CP087300
Coordinates   1706040..1706675 (+) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain OC061     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1701040..1711675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO014_RS08520 - 1701880..1702893 (+) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -
  LO014_RS08525 murU 1702893..1703582 (+) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  LO014_RS08530 rsmG 1703670..1704302 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LO014_RS08535 - 1704324..1705106 (+) 783 WP_000057212.1 ParA family protein -
  LO014_RS08540 - 1705103..1705990 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  LO014_RS08545 exbB 1706040..1706675 (+) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LO014_RS08550 - 1706691..1707119 (+) 429 WP_000669684.1 biopolymer transporter ExbD -
  LO014_RS08555 msbA 1707116..1708843 (+) 1728 WP_001070723.1 lipid A export permease/ATP-binding protein MsbA -
  LO014_RS08560 lpxK 1708846..1709856 (+) 1011 WP_005139245.1 tetraacyldisaccharide 4'-kinase -
  LO014_RS08565 kdsB 1709866..1710627 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LO014_RS08570 - 1710639..1711619 (+) 981 WP_001075412.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=544712 LO014_RS08545 WP_000264037.1 1706040..1706675(+) (exbB) [Acinetobacter baumannii strain OC061]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=544712 LO014_RS08545 WP_000264037.1 1706040..1706675(+) (exbB) [Acinetobacter baumannii strain OC061]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCACCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTGATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393