Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   J0J36_RS09490 Genome accession   NZ_CP071293
Coordinates   1903386..1904429 (-) Length   347 a.a.
NCBI ID   WP_153925461.1    Uniprot ID   -
Organism   Lactococcus sp. LG1074     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1898386..1909429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J36_RS09475 (J0J36_09475) rpsB 1898419..1899192 (-) 774 WP_003133158.1 30S ribosomal protein S2 -
  J0J36_RS09480 (J0J36_09480) - 1899465..1900505 (+) 1041 WP_019291938.1 lactonase family protein -
  J0J36_RS09485 (J0J36_09485) adhE 1900661..1903354 (+) 2694 WP_019291939.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  J0J36_RS09490 (J0J36_09490) sepM 1903386..1904429 (-) 1044 WP_153925461.1 SepM family pheromone-processing serine protease Regulator
  J0J36_RS09495 (J0J36_09495) coaD 1904419..1904916 (-) 498 WP_019291941.1 pantetheine-phosphate adenylyltransferase -
  J0J36_RS09500 (J0J36_09500) rsmD 1904906..1905445 (-) 540 WP_019293304.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  J0J36_RS09505 (J0J36_09505) - 1905544..1906890 (-) 1347 WP_003133148.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37787.15 Da        Isoelectric Point: 7.9913

>NTDB_id=544691 J0J36_RS09490 WP_153925461.1 1903386..1904429(-) (sepM) [Lactococcus sp. LG1074]
MKNEKIKKHKKLKLFFAIALPLLIVVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVRANAASMLYS
KSNSFATVVSSEEMTGGMTNQQFDLVNQFYMQTAQNTAIYQAFKLAGKLYEMKYQGVYVLSITEDSTFKNALQLSDTITA
VNGHTFKSSTEMIDYVSQQKVGDNVTIKYTRVDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPKVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNAGAKIFLCPDETEEQTKASGTTNNYTDAL
AAAKKLNTDMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=544691 J0J36_RS09490 WP_153925461.1 1903386..1904429(-) (sepM) [Lactococcus sp. LG1074]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGCCATCGCGCTACCGCTTCTTATTGTAGTGGG
TTTATTCTTCCCCTTACCTTACTATATCGAGCAGCCAGGAGGAACCATTCCAGTTAACCAAATGGTTGATGTTGCAGGGA
AAAAAGACGAACATAAAGGCAACTTTTATTTAACGACAGTTGAAATGGTTCGCGCCAATGCAGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCCACTGTTGTGAGTAGTGAAGAGATGACGGGTGGAATGACCAATCAGCAATTTGACTTGGTCAA
CCAGTTTTATATGCAGACAGCGCAAAACACGGCTATTTATCAGGCCTTTAAGTTGGCAGGGAAACTTTATGAGATGAAGT
ATCAAGGTGTTTATGTTTTGAGCATCACTGAGGATTCAACCTTTAAAAATGCCTTACAACTTTCAGATACGATAACGGCA
GTTAATGGACATACTTTCAAATCTTCAACTGAGATGATTGATTATGTATCGCAACAAAAAGTTGGGGATAACGTTACCAT
CAAATATACACGTGTGGATGGCAGTAATCATGAAGCCACAGGTAAGTACATTAAGTTGAGTAATGGTAAAACAGGGATTG
GTATTGGTTTAGTAGATCATACCCAGGTTGTGACAGACCCTAAAGTTAAAATCGATGCTGGAAGTATTGGCGGGCCAAGT
GCTGGTATGATGTTTACCTTGGAAATATATAGCCAAATTACAGGCAAAGATTTACGTCAAGGACGCGAAATTGCAGGTAC
TGGAACGATCAATGAGGATGGCAGCATCGGGCAAATAGGTGGCGTTGATAAAAAAGTTGCTACAGCAAGTAATGCGGGCG
CAAAAATTTTCCTTTGCCCAGATGAAACGGAAGAACAGACAAAGGCTTCTGGTACAACAAATAACTACACAGATGCACTT
GCGGCAGCTAAAAAGTTGAATACAGATATGAAAATTGTACCTGTAAAGACAATTCAAGATGCGCTAGATTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(229-308)

PDZ domain (PDZ_2)

(134-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.991

100

0.49