Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   J0J34_RS09135 Genome accession   NZ_CP071290
Coordinates   1814471..1815514 (-) Length   347 a.a.
NCBI ID   WP_206886262.1    Uniprot ID   -
Organism   Lactococcus garvieae strain LG791     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1809471..1820514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J34_RS09120 (J0J34_09120) rpsB 1809505..1810278 (-) 774 WP_014025489.1 30S ribosomal protein S2 -
  J0J34_RS09125 (J0J34_09125) - 1810551..1811591 (+) 1041 WP_014025490.1 lactonase family protein -
  J0J34_RS09130 (J0J34_09130) adhE 1811747..1814440 (+) 2694 WP_014025491.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  J0J34_RS09135 (J0J34_09135) sepM 1814471..1815514 (-) 1044 WP_206886262.1 SepM family pheromone-processing serine protease Regulator
  J0J34_RS09140 (J0J34_09140) coaD 1815504..1816001 (-) 498 WP_014025493.1 pantetheine-phosphate adenylyltransferase -
  J0J34_RS09145 (J0J34_09145) rsmD 1815991..1816530 (-) 540 WP_014025494.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  J0J34_RS09150 (J0J34_09150) - 1816625..1817971 (-) 1347 WP_206886264.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37762.07 Da        Isoelectric Point: 6.9820

>NTDB_id=544645 J0J34_RS09135 WP_206886262.1 1814471..1815514(-) (sepM) [Lactococcus garvieae strain LG791]
MKNEKIKKHKKLKLFFAIALPLLIVVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVQANAASMLYS
KSNSFATILSSEEMTGGMTNQQFDLVNQFYMQTAQNTAVYQAFKLAGKPYEMKYQGVYVLSITEDSTFKNDLQLSDTITA
VNGHTFKSSTDMIDYVSQQKVGDEVTIKYTRMDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPKVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNSGAKIFLCPDETEEQAKASGTTNNYTAAL
AAAKKLNTDMKIVPVKTVQDALDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=544645 J0J34_RS09135 WP_206886262.1 1814471..1815514(-) (sepM) [Lactococcus garvieae strain LG791]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGCCATCGCGTTACCGCTTCTTATTGTAGTGGG
TTTGTTCTTCCCCTTACCTTACTATATCGAGCAGCCCGGAGGAACCATTCCAGTTAATCAGATGGTCGATGTTGCGGGAA
AGAAAGATGAACATAAAGGCAATTTTTATTTAACGACTGTTGAAATGGTGCAGGCCAATGCCGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCCACTATTTTGAGTAGTGAAGAGATGACGGGTGGGATGACTAATCAGCAATTTGACTTGGTCAA
CCAGTTCTATATGCAGACCGCGCAAAATACAGCTGTTTATCAGGCCTTTAAGTTGGCAGGGAAACCTTATGAGATGAAGT
ATCAAGGGGTCTACGTTTTGAGTATCACTGAGGATTCGACATTTAAAAATGACTTGCAACTTTCGGATACGATAACGGCA
GTTAATGGCCACACTTTCAAATCTTCAACTGATATGATTGACTATGTGTCTCAACAAAAAGTTGGAGATGAGGTGACCAT
CAAGTACACACGGATGGATGGCAGCAACCATGAAGCCACAGGAAAGTACATTAAGTTGAGTAATGGTAAAACAGGGATTG
GTATTGGTTTAGTAGATCATACACAGGTTGTGACAGACCCTAAAGTTAAGATCGATGCCGGAAGTATTGGCGGGCCAAGT
GCTGGGATGATGTTTACCTTGGAAATATATAGCCAAATCACAGGCAAAGATTTACGTCAAGGACGCGAAATTGCAGGTAC
TGGAACGATCAATGAAGATGGCAGCATCGGGCAAATAGGTGGTGTTGATAAAAAAGTTGCTACAGCAAGCAATTCGGGTG
CAAAAATTTTCCTTTGCCCGGATGAAACGGAAGAACAGGCAAAGGCTTCGGGTACAACAAATAACTATACAGCTGCGCTT
GCGGCAGCTAAAAAGTTGAATACAGATATGAAAATCGTACCTGTAAAGACGGTCCAAGATGCACTAGACTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(134-194)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(229-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

49.28

100

0.493