Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LO009_RS08620 Genome accession   NZ_CP087298
Coordinates   1789793..1790428 (+) Length   211 a.a.
NCBI ID   WP_000264032.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC070     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1784793..1795428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO009_RS08595 - 1785633..1786646 (+) 1014 WP_001096104.1 aminoglycoside phosphotransferase family protein -
  LO009_RS08600 murU 1786646..1787335 (+) 690 WP_000646451.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  LO009_RS08605 rsmG 1787423..1788055 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LO009_RS08610 - 1788077..1788859 (+) 783 WP_138148980.1 ParA family protein -
  LO009_RS08615 - 1788856..1789743 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  LO009_RS08620 exbB 1789793..1790428 (+) 636 WP_000264032.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LO009_RS08625 - 1790444..1790872 (+) 429 WP_000669684.1 biopolymer transporter ExbD -
  LO009_RS08630 msbA 1790869..1792596 (+) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  LO009_RS08635 lpxK 1792599..1793609 (+) 1011 WP_000050466.1 tetraacyldisaccharide 4'-kinase -
  LO009_RS08640 kdsB 1793619..1794380 (+) 762 WP_138148982.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LO009_RS08645 - 1794392..1795372 (+) 981 WP_138148984.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23280.21 Da        Isoelectric Point: 6.8731

>NTDB_id=544635 LO009_RS08620 WP_000264032.1 1789793..1790428(+) (exbB) [Acinetobacter baumannii strain OC070]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGRADISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=544635 LO009_RS08620 WP_000264032.1 1789793..1790428(+) (exbB) [Acinetobacter baumannii strain OC070]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCCGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393