Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LO740_RS13540 Genome accession   NZ_CP087294
Coordinates   2743892..2745319 (+) Length   475 a.a.
NCBI ID   WP_000980557.1    Uniprot ID   -
Organism   Escherichia coli strain APEC E956     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2738892..2750319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO740_RS13500 (LO740_13485) yeeW 2739076..2739270 (+) 195 WP_000988600.1 DUF5983 family protein -
  LO740_RS13505 (LO740_13490) - 2739316..2739396 (+) 81 Protein_2643 hypothetical protein -
  LO740_RS24540 - 2739685..2739858 (-) 174 WP_032082634.1 transposase domain-containing protein -
  LO740_RS13515 (LO740_13500) - 2739885..2740067 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  LO740_RS13520 (LO740_13505) tmaR 2740168..2740497 (-) 330 WP_000450409.1 DUF496 family protein -
  LO740_RS13525 (LO740_13510) yeeA 2740669..2741727 (-) 1059 WP_063091015.1 FUSC family protein -
  LO740_RS13530 (LO740_13515) sbmC 2741925..2742398 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  LO740_RS13535 (LO740_13520) dacD 2742517..2743683 (-) 1167 WP_032285345.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  LO740_RS13540 (LO740_13525) sbcB 2743892..2745319 (+) 1428 WP_000980557.1 exodeoxyribonuclease I Machinery gene
  LO740_RS13545 (LO740_13530) tsuB 2745362..2745589 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  LO740_RS13550 (LO740_13535) tsuA 2745603..2746661 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  LO740_RS13555 (LO740_13540) plaP 2746839..2748197 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  LO740_RS13560 (LO740_13545) yoeI 2748187..2748249 (-) 63 WP_010723108.1 membrane protein YoeI -
  LO740_RS13565 (LO740_13550) yeeY 2748464..2749393 (-) 930 WP_001697221.1 LysR substrate-binding domain-containing protein -
  LO740_RS13570 (LO740_13555) yeeZ 2749439..2750263 (-) 825 WP_000754749.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.73 Da        Isoelectric Point: 5.4700

>NTDB_id=544556 LO740_RS13540 WP_000980557.1 2743892..2745319(+) (sbcB) [Escherichia coli strain APEC E956]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=544556 LO740_RS13540 WP_000980557.1 2743892..2745319(+) (sbcB) [Escherichia coli strain APEC E956]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583