Detailed information NTG0544520

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LO740_RS00300
• Genome accession: NZ_CP087294
• Coordinates: 50593..51618 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain APEC E956
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 45593..56618

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LO740_RS00270 (LO740_00270)	zapB	45677..45922 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
LO740_RS00275 (LO740_00275)	rraA	46007..46492 (-)	486	WP_000872909.1	ribonuclease E activity regulator RraA	-
LO740_RS00280 (LO740_00280)	menA	46585..47511 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LO740_RS00285 (LO740_00285)	hslU	47578..48909 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
LO740_RS00290 (LO740_00290)	hslV	48919..49449 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LO740_RS00295 (LO740_00295)	ftsN	49542..50501 (-)	960	WP_000068818.1	cell division protein FtsN	-
LO740_RS00300 (LO740_00300)	cytR	50593..51618 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LO740_RS00305 (LO740_00305)	priA	51774..53972 (-)	2199	WP_001318166.1	primosomal protein N'	Machinery gene
LO740_RS00310 (LO740_00310)	rpmE	54175..54387 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
LO740_RS00315 (LO740_00315)	yiiX	54448..55056 (-)	609	WP_000702299.1	YiiX family permuted papain-like enzyme	-
LO740_RS00320 (LO740_00320)	metJ	55116..55433 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=544520 LO740_RS00300 WP_000644904.1 50593..51618(-) (cytR) [Escherichia coli strain APEC E956]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=544520 LO740_RS00300 WP_000644904.1 50593..51618(-) (cytR) [Escherichia coli strain APEC E956]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACTATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTCCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCTGGAAGCAAAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGTGATGTGATGGCGCTCGGCGCACTTTCGCAGGCAAAACGCCA
GGGGCTAAAAGTACCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628