Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ANA_RS09020 Genome accession   NC_019427
Coordinates   2041404..2042918 (-) Length   504 a.a.
NCBI ID   WP_015079763.1    Uniprot ID   K7WVM6
Organism   Anabaena sp. 90     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2036404..2047918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANA_RS23500 (ANA_C11843) - 2040235..2041326 (+) 1092 WP_015079762.1 HNH endonuclease -
  ANA_RS09020 (ANA_C11844) radA 2041404..2042918 (-) 1515 WP_015079763.1 DNA repair protein RadA Machinery gene
  ANA_RS09025 (ANA_C11845) rpaB 2043091..2043819 (+) 729 WP_015079764.1 response regulator transcription factor RpaB -
  ANA_RS09030 (ANA_C11846) - 2043982..2044629 (+) 648 WP_015079765.1 cofactor assembly of complex C subunit B -
  ANA_RS09035 (ANA_C11847) - 2044759..2045277 (+) 519 WP_015079766.1 DUF456 domain-containing protein -
  ANA_RS09040 (ANA_C11848) crtO 2045294..2046982 (-) 1689 WP_015079767.1 beta-carotene ketolase CrtO -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54298.12 Da        Isoelectric Point: 5.0043

>NTDB_id=54439 ANA_RS09020 WP_015079763.1 2041404..2042918(-) (radA) [Anabaena sp. 90]
MAKPKTIYICSSCAAEFSQWFGKCSNCDTYDSLVEQNISSFIGDIPSRSGVGNWQAGGHSKSHNKPAKARSSLTFDQISD
RQIARWESGYGELDRVLGGGIVPGSMVLIGGDPGIGKSTLLLQVSNQLAQKYRILYVTGEESGQQVKLRASRLGMSKPPT
LVTEDPENKDPEKPIDPDSIGANLYVLPETDLEEILREIDSLKPNVAVIDSIQTVFFPALTSAPGSVAQVRECTAALMKV
AKHEDITMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVSQGLKEVDNPSELF
LGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGIDYNRLVQILAVLEKRVGIPMSKLDSYVASAGGLN
VEEPAVDLGIAVAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKRAIVPKGTKFPEIGIEILPVGK
VIDAIIAAVPHQELTEEDLEPDED

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=54439 ANA_RS09020 WP_015079763.1 2041404..2042918(-) (radA) [Anabaena sp. 90]
ATGGCAAAGCCAAAAACCATTTATATCTGTAGTAGTTGTGCAGCGGAATTCTCTCAATGGTTCGGAAAATGTTCAAATTG
TGACACTTACGATTCTTTAGTTGAGCAAAATATTAGTTCTTTTATCGGGGATATACCTAGCCGGTCTGGAGTGGGAAATT
GGCAAGCTGGAGGTCATAGTAAGTCTCATAATAAACCAGCTAAAGCCAGATCTTCTCTGACTTTTGACCAAATTAGCGAT
CGCCAAATTGCTCGTTGGGAGTCCGGTTATGGGGAATTAGATCGAGTTTTAGGTGGTGGAATTGTTCCCGGTTCGATGGT
GCTAATTGGTGGTGATCCTGGTATCGGTAAATCAACTTTACTACTGCAAGTTTCTAACCAATTGGCGCAAAAATACCGAA
TTCTCTATGTGACTGGAGAAGAATCTGGACAACAGGTAAAATTGCGTGCTTCTCGTTTGGGAATGTCAAAACCACCTACG
CTAGTCACGGAAGATCCTGAAAACAAAGATCCGGAAAAACCGATAGATCCTGACAGTATAGGTGCAAATTTGTATGTTTT
GCCAGAAACGGATTTAGAAGAAATTCTGAGGGAGATAGATTCTCTAAAACCAAATGTAGCGGTAATAGATAGTATCCAAA
CAGTGTTTTTTCCTGCTTTGACATCAGCACCGGGTTCAGTTGCTCAAGTCAGGGAATGTACCGCAGCTTTGATGAAGGTG
GCAAAACATGAAGATATTACGATGTTAATTGTGGGTCATGTTACCAAAGAAGGAGCGATCGCCGGTCCCAAAGTATTAGA
ACATTTAGTAGATACCGTATTATATTTTGAAGGCGATCGCTTTGCTTCCCACAGATTATTAAGAACTGTAAAAAACCGTT
TCGGAGCAACCCACGAAATTGGTATATTTGAAATGGTATCCCAAGGATTAAAGGAAGTTGATAACCCTTCCGAACTGTTT
TTGGGCAATCGTGATGATCCGGCTCCGGGTACGGCTATTGTGGTAGCTTGTGAAGGAACAAGACCAATAGTTGTGGAATT
ACAGGCTTTAGTCAGTCCTACCAGTTACCCATCTCCTCGTCGGGCGGGTACAGGCATAGATTATAATCGCTTAGTGCAGA
TTCTCGCCGTCTTAGAAAAGCGTGTAGGGATACCTATGTCCAAATTAGATTCTTACGTTGCTTCTGCGGGGGGATTAAAT
GTAGAAGAACCAGCGGTAGACTTAGGAATTGCAGTAGCGATAGTTGCCAGTTTCCGCGATCGAATCGTTGATCCTGGTAC
AGTCTTAATTGGGGAAGTAGGGTTAGGGGGACAAGTGCGGTCGGTTTCCCAAATGGAACTACGCTTAAAAGAAGCCGCGA
AACTAGGATTTAAAAGAGCCATAGTTCCTAAAGGGACAAAATTCCCTGAGATTGGGATTGAGATACTACCAGTAGGTAAA
GTCATAGATGCAATTATTGCGGCTGTTCCTCATCAAGAATTGACAGAAGAAGATTTAGAACCTGATGAGGATTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(89-293)

Subunit ChlI of Mg-chelatase (ChlI)

(399-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K7WVM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.102

97.421

0.488
  radA Streptococcus pneumoniae Rx1

46.203

94.048

0.435
  radA Streptococcus pneumoniae D39

46.203

94.048

0.435
  radA Streptococcus pneumoniae R6

46.203

94.048

0.435
  radA Streptococcus pneumoniae TIGR4

46.203

94.048

0.435
  radA Streptococcus mitis NCTC 12261

46.203

94.048

0.435
  radA Streptococcus mitis SK321

46.203

94.048

0.435

Multiple sequence alignment