Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J0J80_RS04620 Genome accession   NZ_CP071251
Coordinates   923680..925068 (+) Length   462 a.a.
NCBI ID   WP_068759265.1    Uniprot ID   A0A0X1TKM2
Organism   Turicibacter bilis strain PIG517     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 918680..930068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J80_RS04600 (J0J80_04615) - 920466..920795 (+) 330 WP_055243496.1 hypothetical protein -
  J0J80_RS04605 (J0J80_04620) - 921072..921581 (+) 510 WP_212723260.1 RNA polymerase sigma factor -
  J0J80_RS04610 (J0J80_04625) - 921585..922142 (+) 558 WP_055275503.1 hypothetical protein -
  J0J80_RS04615 (J0J80_04630) hflX 922182..923447 (-) 1266 WP_055275505.1 GTPase HflX -
  J0J80_RS04620 (J0J80_04635) radA 923680..925068 (+) 1389 WP_068759265.1 DNA repair protein RadA Machinery gene
  J0J80_RS04625 (J0J80_04640) - 925101..925934 (+) 834 WP_212723261.1 DUF4349 domain-containing protein -
  J0J80_RS04630 (J0J80_04645) - 925949..926968 (+) 1020 WP_212723262.1 YobA family protein -
  J0J80_RS04635 (J0J80_04650) - 927001..928221 (-) 1221 WP_055275513.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50945.81 Da        Isoelectric Point: 7.9828

>NTDB_id=544334 J0J80_RS04620 WP_068759265.1 923680..925068(+) (radA) [Turicibacter bilis strain PIG517]
MAKARTKTSFFCQQCGTESLKWVGRCPGCGEWNTMVEELKPTKAEQRRGFVASESMAKPQRLQEIETKEEARIQTSMSEL
NRVLGGGIVRGSLVLCGGEPGIGKSTLLLQTAQDLAHKNVQVLYVSGEESARQIKLRAERLGVSSEHLYIYAETDLTLIE
RQIQQLKPEFVIIDSIQTIHMPEVTSAPGSVSQVRECTAQLMKIAKIGGISVFIVGHVTKDGNIAGPRLLEHMVDTVLYF
EGDRHHTYRILRAVKNRFGSTNEIGIFDMKEEGLDEVTNASEVFLEDRTKGLPGTAIMASIEGTRPILVEIQSLLTPTSF
GNPKRMASGVDHNRVSLILAVLEKRMGFFLQNQDTYVKVTGGVKLDEPAVDLAIVASIVSSYKDKMTPSGDVYMGEVGLT
GEIRRVSRIEERVKEAKKLGFTRAIIPKKNIGGWTAPKGMEIVGVDTISDALKAMFKDDLKF

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=544334 J0J80_RS04620 WP_068759265.1 923680..925068(+) (radA) [Turicibacter bilis strain PIG517]
ATGGCGAAAGCAAGAACAAAAACATCATTTTTCTGCCAGCAATGTGGGACGGAAAGTTTGAAATGGGTCGGAAGATGTCC
AGGTTGTGGCGAATGGAATACGATGGTGGAGGAATTAAAGCCCACAAAGGCAGAACAGCGCCGTGGCTTTGTAGCAAGTG
AAAGTATGGCAAAACCTCAACGTCTACAAGAGATTGAAACAAAAGAGGAAGCACGTATTCAGACCTCAATGAGTGAGCTT
AATCGTGTTCTTGGTGGTGGGATTGTTCGTGGATCACTTGTTCTGTGTGGGGGTGAGCCTGGGATTGGGAAATCAACACT
ACTTTTACAAACGGCACAAGATTTAGCGCATAAAAATGTTCAAGTATTATATGTTTCAGGAGAAGAATCTGCTCGTCAAA
TTAAACTTCGTGCTGAGCGTTTAGGGGTAAGTAGCGAGCACTTATATATTTACGCAGAAACAGATTTAACTTTAATTGAA
CGTCAAATTCAACAATTAAAACCAGAGTTTGTCATTATCGACTCGATTCAGACGATTCATATGCCAGAGGTAACATCGGC
ACCTGGGAGTGTCTCGCAAGTTCGTGAATGTACGGCCCAATTGATGAAGATTGCTAAAATTGGTGGAATTTCAGTCTTTA
TTGTCGGACATGTGACGAAAGATGGAAATATCGCTGGGCCACGTTTACTCGAGCATATGGTGGATACTGTCTTATATTTT
GAAGGCGATCGTCATCATACGTATCGTATTTTACGAGCAGTTAAAAACCGATTCGGTTCAACGAATGAGATTGGAATCTT
TGATATGAAAGAAGAGGGGCTTGATGAAGTGACGAATGCTTCTGAGGTCTTCTTAGAAGATCGCACGAAAGGATTACCAG
GAACGGCGATTATGGCCTCAATTGAAGGAACACGTCCAATCTTAGTTGAGATTCAATCATTATTAACGCCGACTTCATTT
GGAAATCCAAAACGAATGGCATCTGGAGTGGATCATAATCGTGTGTCTTTAATTTTAGCCGTGCTTGAAAAACGTATGGG
ATTCTTCTTACAAAATCAAGATACATATGTGAAAGTAACTGGTGGTGTAAAGTTAGATGAACCGGCTGTCGATTTAGCAA
TTGTGGCAAGTATTGTTTCAAGTTATAAAGATAAAATGACGCCAAGTGGCGATGTATATATGGGAGAGGTTGGATTAACC
GGTGAAATTCGACGTGTCTCTCGTATCGAAGAGCGTGTCAAAGAAGCGAAAAAACTTGGGTTTACGCGCGCAATTATTCC
AAAGAAAAATATAGGTGGATGGACAGCTCCAAAAGGAATGGAGATTGTTGGGGTTGATACCATTTCGGATGCACTTAAAG
CAATGTTTAAAGATGATTTGAAGTTCTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-222)

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(11-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X1TKM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.265

97.835

0.639
  radA Streptococcus mitis NCTC 12261

58.72

98.052

0.576
  radA Streptococcus pneumoniae Rx1

58.72

98.052

0.576
  radA Streptococcus pneumoniae D39

58.72

98.052

0.576
  radA Streptococcus pneumoniae R6

58.72

98.052

0.576
  radA Streptococcus pneumoniae TIGR4

58.72

98.052

0.576
  radA Streptococcus mitis SK321

58.499

98.052

0.574