Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   J0J80_RS03420 Genome accession   NZ_CP071251
Coordinates   659071..660027 (-) Length   318 a.a.
NCBI ID   WP_212723396.1    Uniprot ID   -
Organism   Turicibacter bilis strain PIG517     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 654071..665027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J80_RS03405 (J0J80_03420) - 656370..657344 (-) 975 WP_055242426.1 siderophore ABC transporter substrate-binding protein -
  J0J80_RS03410 (J0J80_03425) - 657382..658137 (-) 756 WP_212723394.1 ABC transporter ATP-binding protein -
  J0J80_RS03415 (J0J80_03430) - 658134..659084 (-) 951 WP_212723395.1 iron chelate uptake ABC transporter family permease subunit -
  J0J80_RS03420 (J0J80_03435) ceuB 659071..660027 (-) 957 WP_212723396.1 ABC transporter permease Machinery gene
  J0J80_RS03425 (J0J80_03440) - 660245..660616 (+) 372 WP_055242418.1 AraC family transcriptional regulator -
  J0J80_RS03430 (J0J80_03445) - 660646..661929 (-) 1284 WP_055305035.1 alkaline phosphatase family protein -
  J0J80_RS03435 (J0J80_03450) - 662096..662272 (+) 177 WP_156343902.1 hypothetical protein -
  J0J80_RS03440 (J0J80_03455) - 662317..662619 (-) 303 WP_055242414.1 hypothetical protein -
  J0J80_RS03445 (J0J80_03460) hslO 662636..663505 (-) 870 WP_055277014.1 Hsp33 family molecular chaperone HslO -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34770.80 Da        Isoelectric Point: 9.2695

>NTDB_id=544332 J0J80_RS03420 WP_212723396.1 659071..660027(-) (ceuB) [Turicibacter bilis strain PIG517]
MKKRYLATLLIILSVISVFIGASEVTLSAILNGDSHQLYILFVSRIPRLLSVCVTGIGMSICGLIMQQLTRNKFVSPTTA
ATMDFAKLGMLIAMVFFAGASLVHKMLFAFICSLFGTFLFMGIMKQVKFQNSLFIPLIGMMLGNVVNSITSFIAYQFDLV
QNISSWAQGDFTNIMKGNYELLYLSIPLVVVAFLYANKFTIAGMGEDFSTNLGLNHKWIVNVGLTIVALITSVIIITIGS
IPFIGLIVPNVVSMYLGDNLKHSLGHTALLGVVFLLICDVIGRLVIYPYEVSIGLTVGIIGSVIFLYMLMRRDSNASA

Nucleotide


Download         Length: 957 bp        

>NTDB_id=544332 J0J80_RS03420 WP_212723396.1 659071..660027(-) (ceuB) [Turicibacter bilis strain PIG517]
TTGAAGAAGAGATATTTAGCAACTTTGCTTATCATCTTATCCGTCATTTCCGTGTTTATTGGAGCCAGTGAAGTGACACT
ATCAGCAATTTTAAATGGCGATAGTCATCAATTATATATTTTATTTGTCAGTCGTATACCACGTTTATTAAGTGTTTGTG
TAACTGGGATTGGAATGAGTATCTGCGGTTTAATTATGCAGCAGCTGACAAGAAATAAATTTGTTTCACCAACGACAGCA
GCAACGATGGATTTTGCAAAGTTAGGAATGTTAATTGCAATGGTATTCTTTGCAGGGGCTTCACTCGTCCATAAGATGCT
GTTTGCTTTTATTTGTTCATTATTTGGAACATTTTTATTTATGGGGATTATGAAGCAAGTAAAATTTCAAAATTCCTTAT
TTATTCCGTTAATCGGGATGATGCTTGGAAATGTCGTCAATTCAATTACAAGCTTTATTGCTTATCAGTTTGATCTTGTG
CAAAATATTTCTTCTTGGGCACAGGGAGATTTCACGAACATCATGAAAGGAAATTATGAGTTACTTTATTTAAGTATTCC
TCTTGTTGTTGTCGCTTTCTTATATGCCAATAAATTTACGATTGCTGGGATGGGAGAAGATTTTTCAACTAATCTAGGGC
TTAATCATAAATGGATTGTCAATGTAGGATTAACGATTGTCGCTTTAATTACATCGGTCATCATTATTACCATTGGATCG
ATTCCGTTTATCGGATTAATTGTTCCAAATGTTGTATCGATGTACTTAGGCGATAACTTAAAACATAGTTTAGGACATAC
TGCATTACTAGGAGTAGTATTCTTACTGATTTGCGATGTCATTGGACGCTTAGTCATTTATCCATATGAAGTATCGATTG
GATTAACTGTTGGGATTATCGGAAGTGTCATTTTCTTATACATGTTGATGAGGAGGGATTCAAATGCGTCGGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.84

98.428

0.491