Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BN424_RS16455 Genome accession   NC_019425
Coordinates   3473100..3474476 (-) Length   458 a.a.
NCBI ID   WP_010051982.1    Uniprot ID   K8EW50
Organism   Carnobacterium maltaromaticum LMA28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3468100..3479476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN424_RS16435 (BN424_3486) gltX 3468751..3470223 (-) 1473 WP_010051986.1 glutamate--tRNA ligase -
  BN424_RS16440 (BN424_3487) ispF 3470372..3470845 (-) 474 WP_015077803.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  BN424_RS16445 (BN424_3488) ispD 3470845..3471543 (-) 699 WP_035065103.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BN424_RS16450 (BN424_3489) - 3471914..3473029 (-) 1116 WP_015077806.1 PIN/TRAM domain-containing protein -
  BN424_RS16455 (BN424_3490) radA 3473100..3474476 (-) 1377 WP_010051982.1 DNA repair protein RadA Machinery gene
  BN424_RS16460 (BN424_3491) - 3474716..3475375 (-) 660 WP_015077807.1 class I SAM-dependent methyltransferase -
  BN424_RS16465 (BN424_3492) - 3475590..3476069 (-) 480 WP_010051978.1 glutathione peroxidase -
  BN424_RS16470 (BN424_3493) - 3476175..3476843 (-) 669 WP_015077808.1 ABC transporter ATP-binding protein -
  BN424_RS16475 (BN424_3494) - 3476848..3477924 (-) 1077 WP_015077809.1 ABC transporter permease -
  BN424_RS16480 (BN424_3495) - 3478064..3478660 (-) 597 WP_010051975.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49744.30 Da        Isoelectric Point: 8.0279

>NTDB_id=54432 BN424_RS16455 WP_010051982.1 3473100..3474476(-) (radA) [Carnobacterium maltaromaticum LMA28]
MAKKKATKFVCQACGYESPKWMGRCPNCGAWNQMMEELEVDKNDRQNRVSMTGQTAKAEAIQDITVSKVPRVKTELNELN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSAQLNIAGGKVLYVSGEESASQIKMRADRLGVKGADFYIYPETDMGAIRQ
TIEDLKPEYVIIDSIQTMSQPDVSGVVGSVSQVRESTADLMKIAKSNNIAIFIVGHVTKEGAIAGPRMLEHMVDTVLYFE
GDRHHTFRILRAVKNRFGSTNEIGIFEMREGGLVEVLNPSELFLEERLDGATGSAVVAAMEGTRPILVEIQSLITPTVFG
NAKRTASGVDHNRASLIMAVLEKRAGLMLQNQDAYLKAAGGVKLNEPAIDLAIAVSVASSYREKETRAKDCFIGEIGLTG
EVRRVSRIDQRVQEAAKLGFTRMFIPKNNIGGWTFPKDVEIVGVSTVADTIRKALGDK

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=54432 BN424_RS16455 WP_010051982.1 3473100..3474476(-) (radA) [Carnobacterium maltaromaticum LMA28]
ATGGCGAAGAAAAAAGCCACAAAATTTGTCTGCCAGGCGTGTGGATATGAATCGCCTAAATGGATGGGACGATGTCCGAA
CTGTGGCGCTTGGAATCAAATGATGGAAGAATTAGAAGTAGATAAAAATGATCGTCAGAACCGTGTCAGTATGACCGGTC
AAACTGCTAAAGCAGAAGCGATTCAAGATATTACTGTATCAAAAGTTCCGCGCGTTAAAACTGAATTGAATGAACTAAAC
CGTGTGTTAGGCGGGGGTGTCGTGCCAGGTTCGCTGGTCTTAATTGGCGGAGATCCAGGAATTGGTAAATCAACGTTACT
ATTACAAGTCTCTGCTCAGTTAAATATAGCAGGCGGAAAAGTTTTATACGTATCAGGAGAAGAAAGTGCCAGCCAAATTA
AAATGCGCGCCGATCGATTGGGTGTTAAAGGTGCGGATTTCTATATTTACCCAGAAACAGATATGGGAGCGATTCGTCAA
ACAATTGAAGATTTAAAGCCTGAGTATGTGATTATTGACTCGATCCAAACTATGAGTCAACCAGATGTTTCAGGTGTTGT
CGGAAGTGTTTCTCAAGTTCGGGAAAGTACAGCTGATTTAATGAAGATTGCCAAGAGTAACAATATTGCAATTTTTATCG
TCGGTCATGTGACGAAAGAAGGTGCAATAGCCGGACCAAGAATGCTTGAGCACATGGTAGACACGGTTCTTTATTTTGAA
GGCGATCGACACCATACATTTAGAATTTTACGAGCGGTTAAAAACCGTTTTGGTTCAACGAATGAGATTGGTATTTTCGA
AATGCGCGAAGGTGGACTTGTTGAAGTATTAAATCCATCAGAACTTTTTTTAGAAGAGCGATTAGATGGAGCAACCGGAT
CTGCTGTTGTAGCAGCAATGGAAGGTACACGTCCAATTTTAGTTGAAATACAATCATTGATTACTCCAACTGTTTTTGGA
AATGCCAAACGAACAGCAAGTGGTGTCGATCATAATCGCGCCTCGTTAATTATGGCAGTGTTAGAAAAAAGAGCAGGATT
AATGCTCCAAAATCAAGATGCCTATTTGAAAGCTGCTGGAGGCGTTAAGCTGAATGAGCCAGCAATTGATTTGGCGATTG
CGGTTAGTGTGGCTTCAAGTTACCGAGAAAAAGAGACCCGAGCTAAGGACTGTTTTATCGGTGAAATTGGGTTAACTGGA
GAAGTTCGTCGTGTTAGTCGCATTGATCAACGTGTGCAAGAAGCAGCTAAGTTAGGTTTTACACGTATGTTTATCCCAAA
AAATAATATTGGTGGGTGGACATTTCCAAAAGATGTTGAAATCGTAGGTGTGTCAACAGTTGCCGATACAATCAGAAAAG
CATTAGGTGACAAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

AAA domain (AAA_25)

(68-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K8EW50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

68.791

99.345

0.683
  radA Streptococcus pneumoniae D39

68.791

99.345

0.683
  radA Streptococcus pneumoniae R6

68.791

99.345

0.683
  radA Streptococcus pneumoniae TIGR4

68.791

99.345

0.683
  radA Streptococcus mitis NCTC 12261

68.791

99.345

0.683
  radA Streptococcus mitis SK321

68.571

99.345

0.681
  radA Bacillus subtilis subsp. subtilis str. 168

67.686

100

0.677

Multiple sequence alignment