Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BN424_RS11490 Genome accession   NC_019425
Coordinates   2453406..2455223 (-) Length   605 a.a.
NCBI ID   WP_010050640.1    Uniprot ID   K8E5D8
Organism   Carnobacterium maltaromaticum LMA28     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2448406..2460223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN424_RS11465 (BN424_2440) - 2449271..2450173 (-) 903 WP_010050650.1 RluA family pseudouridine synthase -
  BN424_RS11470 (BN424_2441) - 2450163..2450975 (-) 813 WP_015076977.1 NAD kinase -
  BN424_RS11475 (BN424_2442) - 2451043..2451696 (-) 654 WP_010050647.1 GTP pyrophosphokinase family protein -
  BN424_RS11480 (BN424_2443) - 2451865..2452446 (+) 582 WP_015076978.1 CYTH domain-containing protein -
  BN424_RS11485 (BN424_2444) - 2452636..2453328 (+) 693 WP_010050643.1 DsbA family protein -
  BN424_RS11490 (BN424_2445) pepF 2453406..2455223 (-) 1818 WP_010050640.1 oligoendopeptidase F Regulator
  BN424_RS11495 (BN424_2446) - 2455365..2455979 (-) 615 WP_015076980.1 hypothetical protein -
  BN424_RS11500 (BN424_2447) - 2455960..2456532 (-) 573 WP_015076981.1 competence protein CoiA -
  BN424_RS11505 (BN424_2448) - 2456736..2457404 (-) 669 WP_010050637.1 adaptor protein MecA -
  BN424_RS11510 (BN424_2449) spxA 2457648..2458046 (-) 399 WP_010050634.1 transcriptional regulator SpxA -
  BN424_RS11515 (BN424_2450) - 2458500..2459672 (+) 1173 WP_015075648.1 IS256 family transposase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69125.24 Da        Isoelectric Point: 4.5430

>NTDB_id=54424 BN424_RS11490 WP_010050640.1 2453406..2455223(-) (pepF) [Carnobacterium maltaromaticum LMA28]
MAETKKLPTRAEVPEELTWDLEVIFKSDAEFNQSYQELEEKLTKVDSVKGKIGQSSEDLLKGIDYLLDISNQLETIYVYA
HLKNDQDTTNSEYQAMYDRANNLATKSSEAISWFEPEVLEIPEETLAKFFEENKKLDIYRHFIDQMTSSRAHILSANEEA
LLAGAGEIFGASSRTFSVLNNADIQFPVIKDEEGNDIQLTHGVYGQLMESTNREVREAAFKNLYKTYEGLKNTFASTLSA
HVKYHNYNADVHHYSSARAKALAANHIPEAVYDTLLEVVTENLPLLHRYVALRKELLDVEELHMYDLYTPITGEATVSYT
YEEAKAETLKALAPLGEEYLSIVEEAFENRWVDVVENSGKRSGAYSSGAYETNPYILMNWNDTLNQLFTLVHEMGHSVHS
YYTRKNQPYVYGDYSIFLAEIASTTNENLLTEYLLETQTDPKIRAYVLNHYLDGFKGTIFRQTQFAEFEHFIHEKAAAGI
PLTTEFMSDYYGKLNARYYGPDVVEDPEIAIEWTRIPHFYYNYYVYQYATGFSAASALAAKILAGEEHALEHYLDYLKSG
SSNFPIEVMKKAGVDMTEKAYITDAMHVFEARLNEFEALIAELKA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=54424 BN424_RS11490 WP_010050640.1 2453406..2455223(-) (pepF) [Carnobacterium maltaromaticum LMA28]
ATGGCAGAAACAAAAAAATTACCTACGAGAGCAGAAGTACCTGAAGAGCTAACTTGGGATTTAGAAGTTATTTTTAAATC
AGATGCTGAATTTAATCAAAGCTATCAAGAGTTGGAAGAAAAATTAACAAAAGTTGATTCGGTTAAAGGTAAAATCGGTC
AAAGTTCAGAAGATTTATTAAAAGGAATCGATTATTTGTTAGATATTTCCAATCAACTTGAAACCATTTATGTCTACGCG
CATTTAAAAAATGATCAAGATACGACAAATTCAGAGTATCAAGCAATGTATGATCGTGCGAATAATTTAGCAACAAAATC
TAGTGAGGCAATTTCTTGGTTTGAACCAGAAGTTTTAGAAATTCCAGAAGAAACGCTTGCTAAATTTTTCGAAGAAAATA
AAAAACTCGACATCTATCGTCACTTTATTGATCAAATGACAAGTTCAAGAGCTCATATTCTTTCAGCAAATGAAGAAGCA
CTCTTGGCTGGTGCAGGAGAAATTTTTGGAGCATCAAGTCGAACTTTTAGCGTCTTAAATAATGCAGATATTCAATTTCC
TGTTATTAAGGATGAAGAAGGAAATGATATTCAATTAACCCACGGTGTATATGGACAATTAATGGAAAGTACTAATCGTG
AAGTGCGTGAGGCTGCTTTTAAAAATCTGTATAAAACCTATGAGGGATTAAAAAATACGTTTGCAAGCACATTATCAGCT
CATGTAAAATATCATAACTATAACGCAGATGTGCATCACTATTCATCAGCAAGAGCTAAAGCTCTAGCAGCAAACCATAT
CCCAGAAGCTGTTTATGATACATTATTAGAGGTAGTGACAGAAAACTTACCATTGTTACATCGTTATGTAGCATTACGGA
AAGAACTGCTAGATGTTGAAGAGTTGCACATGTATGATTTGTATACGCCTATAACTGGTGAAGCAACGGTTAGTTACACT
TATGAAGAAGCTAAAGCAGAAACATTAAAAGCCTTGGCACCTTTAGGCGAAGAATATTTAAGTATTGTTGAAGAGGCATT
TGAAAATCGATGGGTCGATGTAGTTGAAAATAGTGGGAAACGCAGTGGTGCATATTCATCAGGTGCTTATGAAACAAATC
CTTATATTTTAATGAACTGGAATGATACGCTAAATCAATTGTTTACCCTAGTTCACGAGATGGGACATAGTGTTCATAGT
TATTATACACGGAAAAATCAACCGTACGTTTACGGAGATTATTCAATCTTCTTAGCTGAAATTGCATCAACGACGAATGA
AAACCTATTGACTGAATATTTACTTGAAACACAAACGGATCCTAAAATTAGAGCCTATGTATTAAATCATTATTTAGATG
GTTTTAAAGGAACCATTTTCCGTCAAACACAATTTGCCGAATTTGAACATTTTATTCATGAAAAAGCTGCAGCAGGAATT
CCTTTAACAACAGAATTTATGTCTGATTATTACGGGAAATTAAATGCTCGTTACTACGGACCTGACGTAGTTGAAGATCC
TGAAATCGCGATTGAATGGACTAGAATTCCGCATTTTTACTACAATTACTATGTTTATCAATATGCAACTGGATTTTCGG
CAGCATCAGCATTAGCGGCTAAAATTTTAGCTGGTGAAGAACATGCCTTAGAGCATTATTTAGACTATTTAAAATCAGGA
AGTAGTAATTTCCCAATTGAAGTCATGAAAAAAGCCGGTGTTGATATGACCGAAAAGGCTTATATTACCGATGCCATGCA
TGTTTTTGAGGCACGTTTAAATGAATTTGAAGCTTTGATTGCAGAGTTGAAAGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K8E5D8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.469

97.686

0.522

Multiple sequence alignment