Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BN424_RS10270 Genome accession   NC_019425
Coordinates   2190929..2192644 (-) Length   571 a.a.
NCBI ID   WP_016356502.1    Uniprot ID   K8ESQ8
Organism   Carnobacterium maltaromaticum LMA28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2185929..2197644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN424_RS10250 (BN424_2181) - 2186277..2187260 (+) 984 WP_015076773.1 magnesium transporter CorA family protein -
  BN424_RS17740 (BN424_2182) - 2187305..2187451 (+) 147 WP_010054204.1 DUF4044 domain-containing protein -
  BN424_RS10255 (BN424_2183) - 2187497..2188741 (-) 1245 WP_035063735.1 ABC transporter permease -
  BN424_RS10260 (BN424_2184) - 2188738..2189445 (-) 708 WP_010054202.1 ABC transporter ATP-binding protein -
  BN424_RS10265 (BN424_2185) - 2189462..2190658 (-) 1197 WP_010054200.1 efflux RND transporter periplasmic adaptor subunit -
  BN424_RS10270 (BN424_2186) recN 2190929..2192644 (-) 1716 WP_016356502.1 DNA repair protein RecN Machinery gene
  BN424_RS10275 (BN424_2187) ahrC 2192685..2193134 (-) 450 WP_010054195.1 transcriptional regulator AhrC/ArgR -
  BN424_RS10280 (BN424_2189) - 2193334..2194155 (-) 822 WP_010054194.1 TlyA family RNA methyltransferase -
  BN424_RS10285 (BN424_2190) - 2194176..2195057 (-) 882 WP_015076781.1 polyprenyl synthetase family protein -
  BN424_RS10290 (BN424_2191) - 2195073..2195309 (-) 237 WP_015076782.1 exodeoxyribonuclease VII small subunit -
  BN424_RS10295 (BN424_2192) xseA 2195306..2196646 (-) 1341 WP_010054191.1 exodeoxyribonuclease VII large subunit -
  BN424_RS10300 (BN424_2193) - 2196661..2197503 (-) 843 WP_035065915.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64912.03 Da        Isoelectric Point: 4.5743

>NTDB_id=54419 BN424_RS10270 WP_016356502.1 2190929..2192644(-) (recN) [Carnobacterium maltaromaticum LMA28]
MLQELAIKNFAIIHDLSLSFETGMTVLTGETGAGKSIIIDAVGLLAGGRASSDFIRHGENKCVLEGLFTLNKDALTFELL
KEFDIDFEDETVLIQRYIHRNGKNVCRINGRLVTIATLRLIGETMIDIHGQNEHQELMNPERHLDMLDQFGDQELVQLLT
DYDSTYVEYQKVKKAYDKWQSSEQELAQRMDMLVYQTNDIELAELISGEEEALIEEKNLLVNYQRIVGALSVSYDALQGE
EGSGVDLIGTAMTEMSTIDSLDESYRQISENIANSYFQLQEAASEILREMDQLAYDEERLNEIEKRLDFIQQMKRKYGES
VQEVLDYYEKIIVELDQIQNRETHMNELISQLGMLSKSLSEKAETVSLKRQEIARLLEKEIHEQLKELYMEKVIFEVRFL
ATEKAGEMKTFNEKGQDIVEFYIATNPGEPLKPLAKVASGGELSRMMLAMKTIFSKSQGITSIIFDEVDTGVSGRVAQAI
ANKIYLVAIHSQVLCITHLPQVAAMADHHLFISKTQVDERTETHVTALQQKEKVQEVARMLAGTEITKLTIEHAKELLKL
AKTEKEKYNSI

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=54419 BN424_RS10270 WP_016356502.1 2190929..2192644(-) (recN) [Carnobacterium maltaromaticum LMA28]
GTGCTACAAGAGTTAGCAATTAAAAATTTTGCAATCATTCATGATTTGTCTTTAAGCTTTGAAACAGGAATGACCGTTTT
AACTGGTGAAACTGGGGCTGGTAAATCGATTATTATTGATGCCGTTGGTTTACTAGCAGGTGGCCGTGCTTCAAGTGATT
TTATTCGTCATGGTGAAAATAAATGCGTCTTAGAAGGATTATTTACGTTAAATAAGGATGCTCTTACTTTTGAATTATTA
AAAGAATTTGATATTGATTTTGAAGATGAAACCGTCTTAATTCAACGTTATATTCATCGAAATGGTAAAAATGTTTGTCG
AATTAATGGTAGACTGGTTACGATTGCGACGTTACGCTTAATTGGAGAAACAATGATTGATATTCATGGTCAGAATGAAC
ATCAAGAACTAATGAATCCTGAGCGACATTTAGATATGTTGGATCAATTCGGTGATCAAGAGTTAGTTCAGCTATTGACG
GACTACGATTCTACTTATGTAGAGTACCAAAAAGTAAAAAAAGCCTATGACAAATGGCAAAGTAGTGAACAAGAATTAGC
TCAACGAATGGATATGCTTGTGTACCAAACAAACGATATTGAATTAGCTGAGCTCATCTCTGGAGAAGAAGAAGCACTAA
TAGAAGAAAAAAATTTATTGGTTAATTATCAGCGGATTGTTGGTGCTTTATCTGTTAGTTACGATGCACTTCAAGGTGAA
GAAGGCAGTGGTGTTGATTTAATAGGAACAGCTATGACTGAAATGAGCACAATAGATTCTCTAGATGAAAGCTATCGCCA
AATTTCAGAAAATATTGCAAACAGTTACTTCCAATTGCAAGAAGCAGCTAGTGAAATTTTAAGGGAAATGGATCAATTAG
CTTATGATGAAGAGCGTTTAAATGAAATTGAAAAACGCTTAGACTTTATTCAACAAATGAAGCGTAAGTACGGAGAAAGT
GTTCAAGAAGTTCTTGATTATTACGAAAAAATTATTGTTGAATTGGATCAAATTCAAAATCGTGAGACACATATGAATGA
ACTGATTAGCCAATTAGGAATGCTGTCTAAAAGTTTATCGGAAAAAGCAGAAACTGTTTCGCTTAAAAGACAGGAAATTG
CTCGACTTTTAGAAAAAGAAATTCATGAGCAACTAAAAGAGTTATATATGGAAAAAGTAATCTTTGAAGTTCGATTTTTA
GCAACTGAAAAAGCTGGTGAAATGAAAACATTTAATGAAAAAGGCCAAGATATCGTGGAATTTTATATTGCAACAAACCC
AGGAGAGCCGCTAAAACCTTTAGCAAAAGTTGCCTCTGGTGGAGAACTTTCACGAATGATGTTAGCGATGAAAACTATTT
TTTCTAAGTCACAAGGAATTACAAGTATTATATTTGATGAAGTAGATACAGGGGTTAGCGGTAGAGTCGCACAAGCAATT
GCCAATAAAATTTACTTGGTGGCAATCCATTCACAGGTTTTATGTATTACACATTTGCCACAGGTTGCGGCAATGGCAGA
TCATCATTTGTTTATTTCAAAAACACAAGTTGATGAGCGAACTGAAACTCATGTGACGGCATTGCAACAAAAGGAAAAAG
TTCAAGAAGTGGCTAGAATGTTAGCTGGAACTGAAATTACAAAGTTAACGATTGAACACGCTAAAGAATTACTAAAATTA
GCAAAAACTGAAAAAGAAAAATACAATTCTATCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K8ESQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.053

99.825

0.51

Multiple sequence alignment