Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LMF34_RS19055 Genome accession   NZ_CP086678
Coordinates   4004055..4005482 (-) Length   475 a.a.
NCBI ID   WP_001530512.1    Uniprot ID   -
Organism   Escherichia coli strain EFF60     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3999055..4010482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMF34_RS19025 yeeZ 3999110..3999934 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  LMF34_RS19030 yeeY 3999980..4000909 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  LMF34_RS19035 yoeI 4001124..4001186 (+) 63 WP_010723108.1 membrane protein YoeI -
  LMF34_RS19040 plaP 4001176..4002534 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  LMF34_RS19045 tsuA 4002713..4003771 (+) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  LMF34_RS19050 tsuB 4003785..4004012 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  LMF34_RS19055 sbcB 4004055..4005482 (-) 1428 WP_001530512.1 exodeoxyribonuclease I Machinery gene
  LMF34_RS19060 dacD 4005691..4006857 (+) 1167 WP_001513842.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  LMF34_RS19065 sbmC 4006976..4007449 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  LMF34_RS19070 yeeA 4007647..4008705 (+) 1059 WP_001200888.1 FUSC family protein -
  LMF34_RS19075 tmaR 4008877..4009206 (+) 330 WP_000450409.1 DUF496 family protein -
  LMF34_RS19080 - 4009307..4009750 (-) 444 WP_001578566.1 EutP/PduV family microcompartment system protein -
  LMF34_RS19085 pduU 4009755..4010105 (-) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54458.73 Da        Isoelectric Point: 5.4720

>NTDB_id=544061 LMF34_RS19055 WP_001530512.1 4004055..4005482(-) (sbcB) [Escherichia coli strain EFF60]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKTNGIEHSNAHDAMADVYATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFAPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=544061 LMF34_RS19055 WP_001530512.1 4004055..4005482(-) (sbcB) [Escherichia coli strain EFF60]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAACGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTTCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCGCGCCAGAGTTTTTGCAGGGTTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579