Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BN424_RS05875 Genome accession   NC_019425
Coordinates   1309015..1309968 (+) Length   317 a.a.
NCBI ID   WP_015076057.1    Uniprot ID   K8E3C5
Organism   Carnobacterium maltaromaticum LMA28     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1304015..1314968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN424_RS05855 (BN424_1262) - 1304789..1305502 (+) 714 WP_015076052.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  BN424_RS05860 (BN424_1263) - 1305521..1307182 (+) 1662 WP_015076053.1 peptide ABC transporter substrate-binding protein -
  BN424_RS05865 (BN424_1264) - 1307232..1307642 (-) 411 WP_035064103.1 hypothetical protein -
  BN424_RS05870 (BN424_1266) - 1308097..1308552 (-) 456 WP_015076056.1 YueI family protein -
  BN424_RS05875 (BN424_1267) ceuB 1309015..1309968 (+) 954 WP_015076057.1 ABC transporter permease Machinery gene
  BN424_RS05880 (BN424_1268) - 1309965..1310930 (+) 966 WP_015076058.1 iron chelate uptake ABC transporter family permease subunit -
  BN424_RS05885 (BN424_1269) - 1310934..1311692 (+) 759 WP_015076059.1 ABC transporter ATP-binding protein -
  BN424_RS05890 (BN424_1270) - 1311724..1312686 (+) 963 WP_016356393.1 siderophore ABC transporter substrate-binding protein -
  BN424_RS05895 (BN424_1271) - 1312812..1313450 (+) 639 WP_015076062.1 YktB family protein -
  BN424_RS05900 (BN424_1272) - 1313643..1314173 (+) 531 WP_015076063.1 DUF308 domain-containing protein -
  BN424_RS05905 (BN424_1273) - 1314241..1314600 (-) 360 WP_016356394.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34615.39 Da        Isoelectric Point: 9.2545

>NTDB_id=54406 BN424_RS05875 WP_015076057.1 1309015..1309968(+) (ceuB) [Carnobacterium maltaromaticum LMA28]
MRKGIWIVLLSVIAFVSLFIGVQDIELSHVLQFNFTKNEQLILQSTRIPRTVSLIIAGATLSICGLIMQHLTQNKFVSPT
TAGTMDSARIGILVAMLFFTDASIFQRTVIAFLFAFAGTVAFIFMVNHLQIKNAVMVPLIGLMFGSILGSIATFLAYQNN
LVQNMASWLQGNFSLVSRGNYELMYLAIPLMIIAYLYADYFTLAGLGKEVAINAGVSYQFVQFGGILIVALASSIVILTV
GSLPFLGVVVPNLIAIARGDHLRKTLFETAVFGSIFLLICDIISRIVIAPYEVSVSLVVGIIGSVLFIYLLLRGEKQ

Nucleotide


Download         Length: 954 bp        

>NTDB_id=54406 BN424_RS05875 WP_015076057.1 1309015..1309968(+) (ceuB) [Carnobacterium maltaromaticum LMA28]
ATGAGAAAGGGGATTTGGATTGTATTACTTAGCGTTATTGCATTTGTTTCATTGTTTATTGGTGTACAAGATATTGAACT
TAGTCATGTGCTTCAGTTCAACTTCACTAAAAATGAGCAACTTATTTTGCAAAGCACAAGAATTCCGCGAACCGTTAGCT
TGATTATTGCCGGAGCTACACTGAGTATTTGTGGCTTAATCATGCAACATTTAACGCAAAATAAATTTGTTTCTCCAACA
ACAGCTGGAACAATGGATAGTGCACGAATCGGAATTTTAGTTGCGATGCTTTTTTTCACAGATGCAAGTATTTTTCAAAG
AACAGTGATTGCTTTTCTATTTGCTTTTGCTGGAACAGTCGCCTTTATTTTTATGGTCAACCACCTGCAGATTAAAAATG
CAGTGATGGTACCACTTATTGGTTTAATGTTCGGAAGTATTTTAGGGTCAATTGCGACGTTTTTAGCGTATCAAAATAAC
TTGGTTCAAAATATGGCGTCATGGCTACAGGGGAATTTTTCATTAGTTTCTAGGGGGAATTATGAATTAATGTACTTAGC
TATACCGTTAATGATAATCGCCTATCTCTATGCAGATTATTTTACATTAGCTGGTTTAGGGAAGGAAGTTGCCATAAATG
CTGGGGTATCCTACCAATTTGTACAATTCGGCGGAATTTTAATTGTTGCATTAGCTTCTTCCATTGTGATTTTAACCGTT
GGAAGTTTACCTTTCTTAGGTGTAGTGGTGCCTAATTTAATCGCCATTGCTCGAGGAGATCATTTGCGCAAAACACTTTT
TGAAACTGCTGTATTTGGATCGATATTTTTATTAATTTGCGATATTATCAGTCGCATTGTGATTGCACCCTATGAAGTTT
CGGTCAGTTTAGTAGTGGGCATTATTGGCAGTGTGTTGTTTATTTACCTATTATTGCGAGGTGAAAAACAATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K8E3C5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.196

98.107

0.483

Multiple sequence alignment