Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LMF34_RS10895 Genome accession   NZ_CP086678
Coordinates   2289163..2290146 (+) Length   327 a.a.
NCBI ID   WP_001196487.1    Uniprot ID   -
Organism   Escherichia coli strain EFF60     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2284163..2295146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMF34_RS10880 dppA 2285463..2287070 (+) 1608 WP_001222876.1 dipeptide ABC transporter substrate-binding protein DppA -
  LMF34_RS10885 dppB 2287221..2288240 (+) 1020 WP_000938855.1 dipeptide ABC transporter permease DppB -
  LMF34_RS10890 dppC 2288250..2289152 (+) 903 WP_000084677.1 dipeptide ABC transporter permease DppC -
  LMF34_RS10895 amiE 2289163..2290146 (+) 984 WP_001196487.1 dipeptide ABC transporter ATP-binding protein Regulator
  LMF34_RS10900 dppF 2290143..2291147 (+) 1005 WP_000103574.1 dipeptide ABC transporter ATP-binding subunit DppF -
  LMF34_RS10905 yhjV 2291177..2292448 (-) 1272 WP_001521562.1 aromatic amino acid transport family protein -
  LMF34_RS10910 - 2292924..2293031 (+) 108 WP_001295224.1 type I toxin-antitoxin system toxin Ldr family protein -
  LMF34_RS10915 - 2293408..2293515 (+) 108 WP_000170738.1 type I toxin-antitoxin system toxin Ldr family protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35860.36 Da        Isoelectric Point: 6.5814

>NTDB_id=544030 LMF34_RS10895 WP_001196487.1 2289163..2290146(+) (amiE) [Escherichia coli strain EFF60]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLSDGRQSKCHYPLD
DAGRPTL

Nucleotide


Download         Length: 984 bp        

>NTDB_id=544030 LMF34_RS10895 WP_001196487.1 2289163..2290146(+) (amiE) [Escherichia coli strain EFF60]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCACCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCTGGTAAATCGGTCAGTTCGCTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCGGAAAAGCTGGAGTTTAACGGTCAGGATTTACAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCGGCAACAAAAGTACCCGCCGTCAGCGGGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGACCAAAACTGCTGATTGCCGATGAGCCGACCACTGCGCTGGACGTGAC
CATTCAGGCGCAAATCATCGAACTGTTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTGATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGCCAGGTGGTGGAAACGGGCGATGCCCACGCC
ATCTTCCATGCGCCGCGTCATCCATATACTCAGGCATTGCTGCGTGCGCTGCCGGAATTTGCTCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTTGTTCCCGGCAAGTATGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTATGCCA
CTGACAGATGTCGCGCTGAAGAACCGGCGCTGAATATGCTCTCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(24-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

43.614

98.165

0.428
  amiE Streptococcus thermophilus LMG 18311

43.302

98.165

0.425
  amiE Streptococcus thermophilus LMD-9

43.302

98.165

0.425
  oppD Streptococcus mutans UA159

41.693

97.554

0.407